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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCTCAAGAACCTCCTCAGGCTCTTCGGCAACAACTGGGAGCCCATCGAGGACGAGTGCTACCGCGCCCTCGCCGACGCCATCCTCGACCGCCACCAGgtgtccttgtcgccaaagccctcctctttttttttggtttacatttcgattcgacttacttagccgctggggttcttcag

Basic information

species Oryza sativa
transcript 13113.m00156
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: 13113.m00156 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G357972_T02 (Zea mays), 5'ss of exon 1
TGTCCTCAAGAACCTCCTCAGGCTCTTCGGCAACAACTGGGAGCCCATCGAGGACGAGTGCTACCGCGCCCTCGCCGACGCCATCCTCGA---------CCGCCACCAGgtgt-ccttgtcgccaaagccctcctctt---tttttttggtttacat--ttcgattcgacttacttagccgctggggttcttcag--------------
         ||||||||||  ||| ||||  |||  |||||||||||| ||||||||||||||||||||||||||||| || ||||||||         ||| | |||||| | ||   ||| | |  |      |     | |  | ||   | ||  || |  |    ||  ||     |||     || | |              
---------GAACCTCCTCCAGCTGTTCGATAACTCCTGGGAGCCCATTGAGGACGAGTGCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAGgtattccccttcgtccactcttcatacccaaatgtaatgggcgaagatgatttgccttcttttgtttttttactgataacctaccgatgatggggagcag