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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacag

Basic information

species Glycine max
transcript GLYMA20G38320.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38320.3 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacag
|| |||| |||||||| ||||  || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||   ||||| |||||||||||||   |  ||| |      | |  | |  |      | | |||     ||||    |||| | |    || | ||    |||     | ||||    |   | ||  |  ||    |                                                     
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaa--gcttcatttggatttgatattgtatggtttgttaaaatag-----------------------------------------------------

upper sequence: GLYMA20G38320.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacag
||||| |  | ||||||||||  || ||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||     |  || |    ||  |   ||       |    |  | |     | || | | |  |||||  ||||   ||| || || | |   | |  ||      ||  ||    ||| ||     ||||  |                                     
CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtat-----actaccttgacttgctgcact-------gccttttggcttgtgcagttgtgtgcaatgcaacttatg---tatgtcacctttgaacggaattt----agaactca----tgttttg---tcttgcatag-----------------------------------

upper sequence: GLYMA20G38320.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacag
||||| |  | |||||||||   || ||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||||||     |  |  |    ||| |   ||       | |  |    |     | || | | |  |||||  |||| ||        |   ||| | |  |   |   ||  || |  ||  |   ||  | |                                        
CTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTACCTCTGGTGGTTCCCATGAGCAAATCAAgtat-----actatcttgacttactgcact-------gctttttgccttgtgcagttgtgtgcaatgcaacttatgtatg------tctgagttcgaacataatttagaactcatgt-tgcgtcttgcaatag----------------------------------------

upper sequence: GLYMA20G38320.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacag
|  | ||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||     | |      |||  | ||||||      |||  |   |       | ||| | | |||| | | |  ||| | |   |   | |  |||                                                                          
CCCTTGTTCATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTTCACATGAACAAATCAAgtatgatcttg-atagaaatttcttgttctcatgtc--ttagcagtcttgttctgtgtttctgcatgcatgttttttattctctttgct--gatgacag--------------------------------------------------------------------------

upper sequence: GLYMA20G38320.3 (Glycine max), 5'ss of exon 9
lower sequence: EFJ31557 (Selaginella moellendorffii), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacag
|| | ||  | || |||   || || |||||||| || |||||||| || || |||||||| || ||||| || || || ||| | ||||||||||||||||| |            || | |||   ||  |   | |  || |||      |                                                                                                                       
CTCTCGTGGAACTTCTTGCCAACGCAGAGTTTGACATAAAGAAAGAGGCAGCGTGGGCTATTTCCAATGCAACCTCTGGCGGTACACATGAACAAATCAAgtagg------------ttgtcaatgcgct-gagacgctgtatctgactctggagacgcag----------------------------------------------------------------------------------------------------------------