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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcag

Basic information

species Glycine max
transcript GLYMA20G38320.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcactt------gtttttaat--attctcaaagaggttaatatgatc----tcataatttttttccttgcaagatatgaatt-atttccccctggtttgcag------
|| |||| |||||||| ||||  || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||   ||||| |||||||||||||   |  ||| |        || || |    | |   | | |  ||||| | |    ||||| |||  |     ||   || || |||   |      |||||||         
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggg----------gaagcacttgtttttaatattctcaaagaggt-taatatgatctcataatttttttccttgcaagatatgaattatttcc-ccctggtttgcag--
||||| |  | ||||||||||  || ||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||             |  |||||   ||||    |   ||     ||  |||   | || ||   | |   | ||| | |  ||  |  | |       ||  |||||   
CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtatactaccttgacttgctgcactgccttttggcttgtgcagttgtgtgcaatgcaa-cttatgtatgtcacctttgaacggaatttagaactcatgttttgtcttgcatag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggg-----gaagcact----tgtttttaatattctcaaagaggttaatatg-atctcataatttttttccttgcaagata--tgaattatttccccctggtttgcag---
||||| |  | |||||||||   || ||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||||||        ||   |||    || ||||    || |  |   |  |   ||| | || ||   | | |   ||  || |||  | |    |        |  |||||    
CTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTACCTCTGGTGGTTCCCATGAGCAAATCAAgtatactatcttgacttactgcactgctttttgccttgtgcagttgtgtgcaatgcaacttatgtatgtctgagttcgaacataatttagaactcatgttgcgtcttgcaatag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcag
|  | ||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||     | |      |||  | ||||||      |||  |   |       | ||| | | |||| | | |  ||| | |   |   | |  |||
CCCTTGTTCATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTTCACATGAACAAATCAAgtatgatcttg-atagaaatttcttgttctcatgtc--ttagcagtcttgttctgtgtttctgcatgcatgttttttattctctttgct--gatgacag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ31557 (Selaginella moellendorffii), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcag
|| | ||  | || |||   || || |||||||| || |||||||| || || |||||||| || ||||| || || || ||| | ||||||||||||||||| |            || | |||   ||  |   | |  || |||      |                                             
CTCTCGTGGAACTTCTTGCCAACGCAGAGTTTGACATAAAGAAAGAGGCAGCGTGGGCTATTTCCAATGCAACCTCTGGCGGTACACATGAACAAATCAAgtagg------------ttgtcaatgcgct-gagacgctgtatctgactctggagacgcag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331218|gb|GR845797.1|GR845797
EST:     GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaa ... tggtttgcagGTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
EST: gi|207802396|gb|GD775628.1|GD775628
EST:     TTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
genomic: TTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaa ... tggtttgcagGTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
EST: gi|22525688|gb|BU084499.1|BU084499
EST:     GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaa ... tggtttgcagGTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG