Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcag

Basic information

species Glycine max
transcript GLYMA20G38320.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcactt------gtttttaat--attctcaaagaggttaatatgatc----tcataatttttttccttgcaagatatgaatt-atttccccctggtttgcag------
|| |||| |||||||| |||| || ||||| ||||||||||| |||||||| ||||| |||||||||||||| || || ||| ||||| ||||||||||||| | ||| | || || | | | | | | ||||| | | ||||| ||| | || || || ||| | |||||||
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggg----------gaagcacttgtttttaatattctcaaagaggt-taatatgatctcataatttttttccttgcaagatatgaattatttcc-ccctggtttgcag--
||||| | | |||||||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||| | ||||| |||| | || || ||| | || || | | | ||| | | || | | | || |||||
CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtatactaccttgacttgctgcactgccttttggcttgtgcagttgtgtgcaatgcaa-cttatgtatgtcacctttgaacggaatttagaactcatgttttgtcttgcatag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggg-----gaagcact----tgtttttaatattctcaaagaggttaatatg-atctcataatttttttccttgcaagata--tgaattatttccccctggtttgcag---
||||| | | ||||||||| || ||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||||| ||||| |||||||||||| || ||| || |||| || | | | | ||| | || || | | | || || ||| | | | | |||||
CTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTACCTCTGGTGGTTCCCATGAGCAAATCAAgtatactatcttgacttactgcactgctttttgccttgtgcagttgtgtgcaatgcaacttatgtatgtctgagttcgaacataatttagaactcatgttgcgtcttgcaatag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 9
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcag
| | || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | | ||| | |||||| ||| | | | ||| | | |||| | | | ||| | | | | | |||
CCCTTGTTCATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTTCACATGAACAAATCAAgtatgatcttg-atagaaatttcttgttctcatgtc--ttagcagtcttgttctgtgtttctgcatgcatgttttttattctctttgct--gatgacag

upper sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ31557 (Selaginella moellendorffii), 5'ss of exon 8
CTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcag
|| | || | || ||| || || |||||||| || |||||||| || || |||||||| || ||||| || || || ||| | ||||||||||||||||| | || | ||| || | | | || ||| |
CTCTCGTGGAACTTCTTGCCAACGCAGAGTTTGACATAAAGAAAGAGGCAGCGTGGGCTATTTCCAATGCAACCTCTGGCGGTACACATGAACAAATCAAgtagg------------ttgtcaatgcgct-gagacgctgtatctgactctggagacgcag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331218|gb|GR845797.1|GR845797
EST:     GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaa ... tggtttgcagGTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
EST: gi|207802396|gb|GD775628.1|GD775628
EST:     TTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
genomic: TTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaa ... tggtttgcagGTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
EST: gi|22525688|gb|BU084499.1|BU084499
EST:     GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA                         GTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatggggaa ... tggtttgcagGTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTG