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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctttcacaacctatgtttttgcttattctctcctaaaattattttgttcttcgctttatcatatttggatataacatggggctgatatattatgcttcatctttcag

Basic information

species Glycine max
transcript GLYMA20G25830.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttcac-aacctatgtt----tttgctta--ttctctcctaaaattattttg-ttcttcgctttatcatatttgg-atataacatggggctgatat-attatgcttcatctttcag
|| | || || ||||| |||||  |||| || || |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| |||||  |||||  ||    |||| | |  |||  | || | ||  |||||  |   | || |    ||||    ||    || |   ||||| | | |||  ||  | ||  ||
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagtt--ttttctag

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttcac-aacctatgtttttgcttattctctcctaaaattattttgttcttc-gctttatcatatttggatat--aacatg----gggctgatatattatgcttcatctttcag--
|| | || || |||||||||||  |||| ||||| |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| ||||| ||| ||  ||  |  || |||  |       || |  | | |||| |  | | ||   |||  |||  || | |      | |  |   ||     |  | |||     
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactttcctttttgttcaatttcgt--ttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctt-tcacaacctatgtttttgcttattctctcctaaaattatttt--gttcttcgctttatcatatttggatataacatggggctgatatattatgcttcatctttcag
||||||| |||| ||| || || ||||| || ||||||||| |||||||  ||||  ||| ||||||||||||| |||||||| | | |||| |||  | ||    |||  ||||  |   | | | || |  |   |   |  |||||     |||   || || ||                               
AACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTATgtagggtatcttctcaacaactcccctttaccttaaccaaccttcatatcacctaaaggcttatgctttg----attaaaatttatcag------------------------------

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctttcacaacctatgtttttgcttattctctcctaaaattattttgttcttcgctt-tatca-tatttggatataacatggggctgatatattatgcttcatctttcag
||||||| || ||||| ||||| ||||| || || || ||| |||||||||| ||  | ||||||||||||||||||||||||||||||||  ||||| | ||    ||    ||| | |    |  ||    ||||| |  | |  |||| |||     |   |     | ||  |   || | ||     ||  ||
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttct--cacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatcaatatgatattgggaggcaagacttctgattttttctgttgtttctag