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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGATCTGCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGGTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttcacattgtaattgttatgctagttgcttctttttttttttttcagcaatcttttattttattatatttaaaataaaaacttaattattgttcag

Basic information

species Glycine max
transcript GLYMA20G25120.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 9
--AAGAGATCTGCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGGTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttcacattgtaattgttatgctagttgcttctttttttttttttcagcaatcttttattttattatatttaaaataaaaacttaattattgttcag
  | ||||| |  | || |||||| | || ||||| |||||||||||  ||||||| || ||||| ||||||||||||||| | |||||||| ||||| || || |  ||  |   |  | ||     | || |   |  | |  |||   |  ||||| |  | | |  |  | |  |  || | |   |                    
TAAGGAGATTT--TAGAGAAACACCTTAAGGCAACCGGTGGAAAAGTGATGACCCGTTTCCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgtttcaatatttgctttcgttaattgtattttcgcacataccacttaaatcatttttgaagattatgcttatatgcttcatcttatgcag-------------------

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 9
AAGAGATCTGCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGGTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttcacattgtaattgttatgcta-gttgcttctttttttttttttcagcaatcttttattttattatatttaaaataaaaacttaattattgttcag
||  ||  |  | || |||||  | |||||||| || ||||||||  ||||||| |||||||| ||||||||||||||| | |||||||| ||||| || || |  || || ||||   ||| |    ||    |        | ||    ||  | |      |    |  || || | |                             
AAAGGAAATTTTAGAAAAACATCTTAAAGCAACTGGAGGAAAAGTGATGACCCGTTTTCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgttttgataat-tttcttcttgaatgcatttccttgcacaaaattttaaaattgatatatatgcttacatgcttcatcacacag--------------------------

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 8
AAGAGATCTGCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGGTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttcacattgtaattgttatgctagttgcttctttttttttttttcagcaatcttttattttattatatttaaaataaaaacttaattattgttcag
||  ||  |  | || |||||  | || ||||| || ||||||||  ||||||| |||||||| ||||||||||||||| | |||||||| ||||| || || |  |  || |    |||   || ||  |||    | |   | |||||||  ||  |    | | |  ||  |   |   | | |||                    
AAAGGAAATTTTGGAAAAACATCTCAAGGCAACTGGAGGAAAAGTGATGACCCGTTTTCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgttttgagaatctccttcat---aaatgc-atgtctttggacacatttttttaattcgatgtgtatatgcttacaagcttcatcacatag-------------------