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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTTGGCAAGCAAAATCCCCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatcatctttttctgttctttgctaatattttgtgcatgtgtgtggggggggaggtgggagggggatttcttgttatcctttttacacctatcagcctatgtccactggcttatttttactgttaatgtgcctcag

Basic information

species Glycine max
transcript GLYMA20G24850.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10254784|gb|BE822550.1|BE822550
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|209708506|gb|BW668116.1|BW668116
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|192320974|gb|FK013490.1|FK013490
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|254324070|gb|GR840495.1|GR840495
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|19453172|gb|BM954582.1|BM954582
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|193729480|gb|FK664328.1|FK664328
EST:     TTGATAAATGAACCNGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTATCAC
genomic: TTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCA-
EST: gi|4396121|gb|AI495118.1|AI495118
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGNGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|254331167|gb|GR843286.1|GR843286
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|254324071|gb|GR840496.1|GR840496
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|254346641|gb|GR856363.1|GR856363
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
EST: gi|16995756|gb|BM085128.1|BM085128
EST:     CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGG                         GAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC
genomic: CAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatc ... tgtgcctcagGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAGCTTGGCAAGCAAAATCCCCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGgtaagggatcatctttttctgttctttgctaatattttgtgcatgtgtgtggggggggaggtgggagggggatttcttgttatcctttttacacctatcagcctatgtccactggcttatttttactgttaatgtgcctcag

- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG