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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAGgtttgttttgcctgtctgtaggttaggattttaggtcttaggttcctgaaagtttggattattggttttgtggagttgatgttatatatgaagctttgctgtag

Basic information

species Glycine max
transcript GLYMA20G19980.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G19980.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 7
AGACAAAGACCTTTATTGATTATTGCCGAGGATGTGGAAAGTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAGgtttgttttgcctgtctgtaggttaggattttaggtcttaggttcctgaaagtttggattattggttttgtggagttgatgttatatatgaagctttgctgtag
|| ||||||||  |||||||| || | || ||||||||||||||||| |||||||||||||| || || ||||| || |||||||||||||||||          |   ||   | | | |||   |   |  ||||||   |||    |||   || | ||   ||    | |||  |    |  ||| |   
AGGCAAAGACCACTATTGATTGTTTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAGgtttg--------aacaacag---aagctcttactacc--gtctcctgac--ttttagctatgacttctttgcttttagattaatagtttcctccctgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268755|gb|BM885011.1|BM885011
EST:     GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAG                         GTGTGTGCTATTAAAGCCCCTGGTTTTGGTGAAAATAGGAAGGCTGGTCTT
genomic: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAGgtttgttttg ... tttgctgtagGTGTGTGCTATTAAAGCCCCTGGTTTTGGTGAAAATAGGAAGGCTGGTCTT
EST: gi|207796276|gb|GD771879.1|GD771879
EST:     GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAG                         GTGTGTGCTATTAAAGCCCCTGGTTTTGGTGAAAATAGGAAGGCTGGTCTT
genomic: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCCGGAATTAAGgtttgttttg ... tttgctgtagGTGTGTGCTATTAAAGCCCCTGGTTTTGGTGAAAATAGGAAGGCTGGTCTT