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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTCCTTATTGCCATATTTGCAATCGTGATGGCAGCCTTTTCCACAGGCATTGATTCGAAGTGCTTTCAGgtgaatcattcttctgagtcttaaccattaaatccagaaagattccttgttgcttcaaaatcccattcttaaggttctaaagctgaattctttgatctaa...

Basic information

species Glycine max
transcript GLYMA20G19930.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G19930.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 9
GGCTTCCTTATTGCCATATTTGCAATCGTGATGGCAGCCTTTTCCACAGGCATTGATTCGAAGTGCTTTCAGgtgaat-cattcttctgagtcttaaccattaaatccagaaagattccttgttgcttcaaaatcccattcttaaggttctaaagctgaattctttgatctaa
 ||||||| ||||| |||| |||||| ||||||||| ||||||||||||||||||||||  | |  || ||||||| | |||| |||||  |  |  |  || | |    ||  | |  |   | ||||   || |  | |                                
AGCTTCCTCATTGCAATATGTGCAATTGTGATGGCAACCTTTTCCACAGGCATTGATTCACAATCATTCCAGgtgactacatttttctgt-taatccctgttcatttggcaagaagtaatgagtccttct--atgctgtccag------------------------------