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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAGgtttgtatgggcatttattatattccatttatgtgtcccttttctttttctgtcaaaattatctctatgttattagttatatttataattttatatgctttttaaag

Basic information

species Glycine max
transcript GLYMA20G11950.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899975|gb|BE608943.1|BE608943
EST:     TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG                         ATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
genomic: TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAGgtttgtatgg ... ctttttaaagATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
EST: gi|192305169|gb|FG997491.1|FG997491
EST:     TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG                         ATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
genomic: TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAGgtttgtatgg ... ctttttaaagATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
EST: gi|298178813|gb|HO024548.1|HO024548
EST:     TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG                         ATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
genomic: TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAGgtttgtatgg ... ctttttaaagATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
EST: gi|18040511|gb|BM308805.1|BM308805
EST:     TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG                         ATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
genomic: TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAGgtttgtatgg ... ctttttaaagATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
EST: gi|22930193|gb|BU547332.1|BU547332
EST:     TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAG                         ATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA
genomic: TAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAGgtttgtatgg ... ctttttaaagATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAA