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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAATCCCTTCCAAATATTCTTGTGTCCCTTCAAgtaagtcaacaaactatagcttgaactctatttgcttgtctattgatagagtttattgatcttttatcatcattacatgcaataaaagttctacactggt...

Basic information

species Glycine max
transcript GLYMA20G08360.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G08360.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G26800.2 (Arabidopsis thaliana), 5'ss of exon 8
GCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAATCCCTTCCAAATATTCTTGTGTCCCTTCAAgtaagtcaacaaactatagcttgaactctatttgcttgtctattgatagagtttattgatcttttatcatcattacatgcaataaaagttctacactggt
||||   || || ||||| ||||||||||| || ||||| ||||| ||||||||||| || ||||||||| | ||| |||| ||  | ||||| || || |||||||||  |   ||||    ||   |||||| || |  ||  ||| | || ||| ||  |||  |||   |   ||||| || ||            
GCTTGAAGCCGTGATGGCAGTTGTGCCAGCGGACAAGCTGGCTGTTCACTTCCATGATACCTATGGGCAAGCTCTTGCAAACATATTGGTGTCTCTCCAGgtaagtcaagcactaatag----aagaatatttgattataaat--ata-acttcatttatggtttgacatgtattggtgcaaaaacag------------

upper sequence: GLYMA20G08360.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 7
GCTTTTGGCTGTAATGGCTGTTGTGCCAGCAGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAATCCCTTCCAAATATTCTTGTGTCCCTTCAAgtaagtcaacaaactatagct-tgaactctatttgcttgtctattgatagagtttattgatcttttatcatcattacatgcaataaaagttctacactggt
||||   ||||||||||||||||| || |  |||||||||||||||||||||||||||||||||||||| || |||||||||||| |  | || || || ||| |  |||    |  |  | | ||    | | |      | ||| ||  |  |  | ||| |||| ||     | | |   | ||   |   |  || |
GCTTGAAGCTGTAATGGCTGTTGTTCCTGTTGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAGgtatgcaaacttcttgaaattgttaaagaaaataggaaaaatcttgttaatgcctgattatcctttaacaa-ggaatacgtttttaagaatgacctgtgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20075741|gb|BQ094524.1|BQ094524
EST:     TCCATGACACTTATGGGCAATCCCTTCCAAATATTCTTGTGTCCCTTCAA                         ATGGGGATCAGTGCAGTTGATTCTTCAGTTGCTGGTCTAGGTGGCTGTCCT
genomic: TCCATGACACTTATGGGCAATCCCTTCCAAATATTCTTGTGTCCCTTCAAgtaagtcaac ... ttctaaacagATGGGGATCAGTGCAGTTGATTCTTCAGTTGCTGGTCTAGGTGGCTGTCCT