Sequence
atgc intronic sequence ATGC exonic sequenceTGCACAGTGGACTAATATGCCTGATCTATTGGAGACAGTAGATTTCAAAGACACTTTTGTTGATGCTGATCACTTAAAAGAAAGTTTTTTGGATTATGAGgttagtatttcattttcaaattcatagaagttattgttgcatggttgtgattgatgtcttccattatgaattagtgtatgaaactaaggtattgatgtgactttcctctcactgtattcttcag
Basic information
species | Glycine max |
transcript | GLYMA20G00260.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 9
TGCACAGTGGACTAATATGCCTGATCTATTGGAGACAGTAGATTTCAAAGACACTTTTGTTGATGCTGATCACTTAAAAGAAAGTTTTTTGGATTATGAGgttagtatttcattttcaaattcatagaagt-tattgttgcatggttgtgattgatgtcttccattatgaattagtgtatgaaactaaggtattgatgtgactttcctctcactgtattcttcag-
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AGCTCAGTGGACAAATATGCCTGATCTTCTGGAGACAGTGGATTTCAAAGATACTTTCCTTGATGCAGACCATTTGAGAGAGAGTTTTTCGGATTATCAGgttg--atcttattttgacgtttttgattttgtgaagttacttatgtttgcttg-tatcttccacaatttcatgaactgtaaaaat--ggtaatcttataccttt----tcgctgtatttcttaag
upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 9
TGCACAGTGGACTAATATGCCTGATCTATTGGAGACAGTAGATTTCAAAGACACTTTTGTTGATGCTGATCACTTAAAAGAAAGTTTTTTGGATTATGAGgttagtatttcattttcaaattcatagaagttattgttgcatggttgtgattgatgtcttccattatgaattagtgtatgaaactaaggtattgatgtgactttcctctcactgtatt-cttcag
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AGCTCAGTGGACTAATATGCCCGATCTTCTTGAGACAGTGGATTTCAAAGATACTTTTCTTGATGTGGACCATCTGAGAGAGTGTTTTTCAGATTATCAGgttgatatt--attttgacatctttattttgtaaaattacttatatttg-tttatatcttccacagt-------ttcatgaactgtaaatggtaatctta-tacctttttactgtatttctttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23051238|gb|BU577067.1|BU577067EST: ACACTTTTGTTGATGCTGGTCACTTAAAAGAAAGTTTTTTGGATTATGAG GTGTCTTTTGTTAATCCTGATGGCTCAGGAAATTTGAATCCAAGGCCTCCT
genomic: ACACTTTTGTTGATGCTGATCACTTAAAAGAAAGTTTTTTGGATTATGAGgttagtattt ... tattcttcagGTGTCTTTTGTTAATCCTGATGGCTCAGGAAATTTGAATCCAAGGCCTCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCACAGTGGACTAATATGCCTGATCTATTGGAGACAGTAGATTTCAAAGACACTTTTGTTGATGCTGATCACTTAAAAGAAAGTTTTTTGGATTATGAGgttagtatttcattttcaaattcatagaagttattgttgcatggttgtgattgatgtcttccattatgaattagtgtatgaaactaaggtattgatgtgactttcctctcactgtattcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA