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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacaccttctaaacttggtatcttgtactttttcttgatatagtcgtgtactttgtatgttgctttatattttttgaccatcaatttttttggtt...

Basic information

species Glycine max
transcript GLYMA19G45140.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacaccttctaaa---cttggtatctt-gtactttttcttgatatagtcgtgtactttgtatgttgctttatattttttgaccatcaatttttttggtt---
|||||||| || |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |      ||| ||   |  | | |||| |||   | ||     || ||  ||    || | |   | | |   |||||     ||   ||||     ||   
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtctttgtatactctccattgatggttttggctgttattttgggttcttggtttttctcatattctttttccacattcag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacaccttctaaacttggtatcttgtactttttcttgatatagtcgtgtactttgtatgttgctttatattttttgaccatcaatttttttggtt
|| || || |||||||| |||||||| ||||| |||||||||||||| ||  | || ||||| || ||  |  |||| ||  | |||||||| || || ||||||  | | | || |    ||||  | ||  | | || |      ||     |  || |   |||||| | || ||| |                   
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCGCGCTTATGCCCAAACTCGACCGgtaagttctcgtgctta-tacggtagatggttttctctcctctctcggtaaccaagctt-tggtttgcttga-atctttag-------------------

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacaccttctaaacttggtatcttgtactttttcttgatatagtcgtgtactttgtatgttgctttatattttttgaccatcaatttttttggtt
|| || || |||||||| |||||||| ||||| |||||||||||||| ||  | || ||||| || ||  |  |||||||  | |||||||| || || ||||||  | | | || |    ||||  | ||  | | || |      ||     ||  | |   |||||| | || ||| |                   
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCTCGCTTATGCCCAAACTCGACCGgtaagttctcgtgctta-tacggtagatggttttctctcctctctcggtaac-cacgctttggtttgcttga-atctttag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295887|gb|FG992653.1|FG992653
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|254320309|gb|GR831117.1|GR831117
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|254338829|gb|GR847546.1|GR847546
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|254337400|gb|GR849353.1|GR849353
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|254337401|gb|GR849354.1|GR849354
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|207781638|gb|GD754399.1|GD754399
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|192300594|gb|FG988891.1|FG988891
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|208155279|gb|GD957144.1|GD957144
EST:     GGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: GGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG