Sequence
atgc intronic sequence ATGC exonic sequenceCTTGTGGAAACAAGAGAGGGCCGCTGTGGGGAATGGGCCAATTGCTTTACGTTATATTGTCGAGCTTTTGGCTATGAGTCACGTCTGgtttgtaactggatgaaattcagtcttttcaatatgttggtttttcttggtttttatgctgcaattgagtagacaatgcattagttttctgtatcattaa...
Basic information
species | Glycine max |
transcript | GLYMA19G43320.4 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g31460.1 (Oryza sativa), 5'ss of exon 9
CTTGTGGAAACAAGAGAGGGCCGCTGTGGGGAATGGGCCAATTGCTTTACGTTATATTGTCGAGCTTTTGGCTATGAGTCACGTCTGgtttgtaactggatg-----aaattcagtcttttcaatatgttggtttttcttggtttttatgctgcaattgagtagacaatgcattagttttctgtatcattaa
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CTTCTAGAAACTAGGAAAGGACGCTGTGGAGAATGGGCCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttccataatattcataaatttgttttatccacaatgata-tacaatttgcttataat--tgtaagcggctctccattcgtccacttgtcagtatactt--
upper sequence: GLYMA19G43320.4 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0030g01930.t01 (Vitis vinifera), 5'ss of exon 9
CTTGTGGAAACAAGAGAGGGCCGCTGTGGGGAATGGGCCAATTGCTTTACGTTATATTGTCGAGCTTTTGGCTATGAGTCACGTCTGgtttgtaactggatgaaattcagtcttttcaatatgttggtttttcttggtttttatgctgcaattgagtagacaatgcattagttttctgtatcattaa--
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CTTGTGGAAACAAGAAAGGGGCGCTGTGGGGAGTGGGCAAATTGCTTTACACTCTATTGTCGAGCTTTTGGTTATGAATCTCGCCTGgttagtaatcctgtgaaaattatttgttgttttttacttggcttttatactggtgttggag-aatttaatattcaa-gtttgaacctcttgaggcataatgcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6566791|gb|AW234423.1|AW234423EST: CCAATTGCTTTACGTTATATTGTCGAGCTTTTGGCTATGAGTCACGTCTG ATCTTTGACTTTACAGATCATGTTTGGACAGAGTGCTTCTCTCAATACTTT
genomic: CCAATTGCTTTACGTTATATTGTCGAGCTTTTGGCTATGAGTCACGTCTGgtttgtaact ... ttatctccagATCTTGGACTTTACAGATCATGTTTGGACAGAGTGCTTCTCTCAATACTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGTGGAAACAAGAGAGGGCCGCTGTGGGGAATGGGCCAATTGCTTTACGTTATATTGTCGAGCTTTTGGCTATGAGTCACGTCTGgtttgtaactggatgaaattcagtcttttcaatatgttggtttttcttggtttttatgctgcaattgagtagacaatgcattagttttctgtatcattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT