Sequence
atgc intronic sequence ATGC exonic sequenceCTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagagatccttgtgcttagaatgtttccttgagattttattggggttatagtttgtgttctttgaagaggttttgaatctttttccttggttgacag
Basic information
species | Glycine max |
transcript | GLYMA19G41770.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
CTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagagat-ccttgtgcttagaatgttt--ccttg--------agattttattggggttatagttt-gtgttc--tttgaagaggttttgaatctttttccttggttgacag--
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CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatag
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagagat--ccttgtgcttagaatgtttccttgagattttattggggttatagtttgtgt------tctttgaagaggttttgaatctttttccttggttgacag--
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CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtatactaccttgacttgctgcactgccttttggcttgtgcagttgtgtgcaatgcaacttatgtatgtcacctttgaacggaatttagaactcatgttttgtcttgcatag
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 8
CTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagagat--ccttgtgcttagaatgtttccttgagattttattggggttatagtttgtgttc-------tttgaagaggttttgaatctttttccttggttgacag---
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CTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTACCTCTGGTGGTTCCCATGAGCAAATCAAgtatactatcttgacttactgcactgctttttgccttgtgcagttgtgtgcaatgcaacttatgtatgtctgagttcgaacataatttagaactcatgttgcgtcttgcaatag
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 9
CTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagagatccttgtgcttagaatgtttccttgagattttattggggttatagtttgtgttctttgaag-aggttttgaatctttttccttggttgacag
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CCCTTGTTCATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTTCACATGAACAAATCAAgtatga--------tcttgatagaaatttcttgttctcatgtcttagcagtcttgttctgtgtttctgcatgcatgttttttattctctttgctgat-gacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7588820|gb|AW704607.1|AW704607EST: GCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAA GTTCCTGGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATG
genomic: GCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagag ... tggttgacagGTTCCTGGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAgtatggagagatccttgtgcttagaatgtttccttgagattttattggggttatagtttgtgttctttgaagaggttttgaatctttttccttggttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA