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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATGTGGTGTTCGTACAAGAACATGGTGGCAAGGATCTTGAAAGTTTTGCACTCCTGAATTTTGACGAGGCAAGGGCTTTACTGGTTCAGgtatgttatacttgttttgattatggttgcacctgctgagcgcttaagcttggcatggtattaatttttaggctaatttctgtcataaaatacag

Basic information

species Glycine max
transcript GLYMA19G41380.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41380.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0060g00450.t01 (Vitis vinifera), 5'ss of exon 9
TGTTATGTGGTGTTCGTACAAGAACATGGTGGCAAGGATCTTGAAAGTTTTGCACTCCTGAATTTTGACGAGGCAAGGGCTTTACTGGTTCAGgtatgttatacttgttttgattatggttg--cacctgctgagcgcttaagcttggcatggtattaatttttaggctaatttctgtcataaaatacag
|| ||||| ||||| || | |||||||||||| |||||||||||||| ||||  ||  |||| ||||| || | | ||  |||| ||||||||||| |||      |||||   ||||  ||  ||  | ||||   | | | |||   |||  | |  ||||    | | |||                
TGCTATGTTGTGTTTGTTCTAGAACATGGTGGTAAGGATCTTGAAAGCTTTGTGCTTTTGAACTTTGATGAAGTACGGAGTTTATTGGTTCAGgtaagttgc-tgggttttatatatgtctgaccagtttctgaagccctgatcttt-tatgtaactgctttt----ccattttgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208154054|gb|GD958383.1|GD958383
EST:     AAAGTTTTGCACTCCTGAATTTTGACGAGGCAAGGGCTTTACTGGTTCAG                         GTTACGGCTGGGCTTGCTGTGGCTGAGTCTGCGTTTGAATTTGAACATCGA
genomic: AAAGTTTTGCACTCCTGAATTTTGACGAGGCAAGGGCTTTACTGGTTCAGgtatgttata ... taaaatacagGTTACGGCTGGGCTTGCTGTGGCTGAGTCTGCGTTTGAATTTGAACATCGA