1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAAATCAGGAGTTTACAAACACATCACAGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgatatgttcctgattgacatttcagtcccctgggacataccatctgaaatttagaattttatactgattgggtgcttttcattttttcag
species | Glycine max |
transcript | GLYMA19G41120.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|9258700|gb|BE346847.1|BE346847
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCTAATCAGTGGAACAGAGAATGGGGAGATEST: gi|7692402|gb|AW760509.1|AW760509
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: GGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|21675978|gb|BQ628329.1|BQ628329
genomic: GGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|7925196|gb|AW831222.1|AW831222
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGTGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|192322841|gb|FK014772.1|FK014772
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|254320265|gb|GR831073.1|GR831073
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|18848714|gb|BM567826.1|BM567826
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGEST: gi|192312976|gb|FK003642.1|FK003642
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGG
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|6914718|gb|AW396248.1|AW396248
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTTATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|10252856|gb|BE820622.1|BE820622
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|192312975|gb|FK003641.1|FK003641
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|16282781|gb|BI945202.1|BI945202
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: AGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGAATAATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|254320264|gb|GR831072.1|GR831072
genomic: AGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGG-ATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|31476328|gb|CD418356.1|CD418356
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|209724788|gb|BW672571.1|BW672571
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|19346981|gb|BM891861.1|BM891861
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATEST: gi|14259461|gb|BG882369.1|BG882369
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
EST: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGG CTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
genomic: CAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgat ... attttttcagCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATCAGGAGTTTACAAACACATCACAGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGATGGGGAACAACTGAAGATGGGGAGGATTATTGGgtatgttgatatgttcctgattgacatttcagtcccctgggacataccatctgaaatttagaattttatactgattgggtgcttttcattttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT