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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAgtaagttgtaatgtaactgtaaatgacaatgttctacctcatttgtctaacgttttacttaaaaaaatatttctaacaccattttcttgctcttttatttaataacag

Basic information

species Glycine max
transcript GLYMA19G39580.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39580.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G03000.1 (Arabidopsis thaliana), 5'ss of exon 8
-------------TTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAgtaagttgtaatgtaactgtaaatgacaatgttctacctcatttgtctaacgttttacttaaaaaaatatttctaacaccattttcttgctcttttatttaata-acag
              |||||||||||||||||||| ||||||| || ||||| ||||| || |||||||| ||| | ||||| || || ||||| || |||||||||                    | || || |   ||| || |   |  | ||| |        | ||   |     |||||   | | ||  ||| |||  ||||
GGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTTCGTCCGGATTGCGTAAACGTTCTGGTGTACTTCTCTATGGCCCTCCAGGAACAGGGAAAgtaagtaa-----------------gccattttttctttcacttttagcatctcttaatagtctgttttttggcagttatatttttgagtttttgaattaaatttacag

upper sequence: GLYMA19G39580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0104g01610.t01 (Vitis vinifera), 5'ss of exon 9
TTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAgtaagttgtaatgt---aactgtaaatgacaatgttc---tacctcattt---gtctaacgttttacttaaaaaaatatttctaacaccattttcttgctcttttatttaataacag
 |||||||||| || || ||| | |||||||| || || |||||||| |||||||||||| | |||||||| |||||||| || |||||||||| |  | |   | |     |||   || |     ||| | ||||   || ||   |||||   |  ||  |  |||         ||  || ||| | |    |||  |||
CTACCTCTCCTTCACAAGGATTTGTTTTCATCCGGGTTGCGTAAGCGCTCTGGTGTTCTTCTTTATGGTCCACCTGGAACAGGGAAAgtaagtttttgtttgttagccacttatggtgatatctcaatacgttatttcttgtttatttttttaaccaggaacctggttcattgctttcttggttactcctattgcaaatctcag