1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTCACTGCTGGAGTCACCCATTCATTTACTGGTAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAGgtaactccactttttcaagctttattatgtttgttgatctatttgaagtctcctagatgtatctaattttaggctttgcctttccaaaagtagaacctca...
species | Glycine max |
transcript | GLYMA19G38780.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAG GCATAAATGGGTGCTTTCTGAAGACGACTGAGAACCTTGATGTTGTTAAGGEST: gi|120492279|gb|EH220446.1|EH220446
genomic: TAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAGgtaactccac ... tctgtggcagGCATAAATGGGTGCTCTCTGAAGACGACTGAGAACCTTGATGTTGTTAAGG
EST: TAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAG GCATAAATGGGTGCTCTCTGAAGACGACTGAGAACCTTCGATGTEST: gi|192323850|gb|FK015631.1|FK015631
genomic: TAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAGgtaactccac ... tctgtggcagGCATAAATGGGTGCTCTCTGAAGACGACTGAGAACCTT-GATGT
EST: TAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAG GCATAAATGGGTGCTCTCTGAAGACGACTGAGAACCTTGATGTTGTTAAAG
genomic: TAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAGgtaactccac ... tctgtggcagGCATAAATGGGTGCTCTCTGAAGACGACTGAGAACCTTGATGTTGTTAA-G
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCACTGCTGGAGTCACCCATTCATTTACTGGTAGTATGGATGATTGCATTAAGCTTCTCTCATTTGATAAAATGTACATAGgtaactccactttttcaagctttattatgtttgttgatctatttgaagtctcctagatgtatctaattttaggctttgcctttccaaaagtagaacctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc