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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGAgtaagtttgaaaagctattttgtactttcttgctttttgtttcttggttattgcctctttcaggacctaggagtgactttataaactgaaaccttttccttttgtcttag

Basic information

species Glycine max
transcript GLYMA19G37310.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37310.4 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G461948_T01 (Zea mays), 5'ss of exon 7
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGAgtaagtttgaaaagctattttgtactttcttgctttttgtt-----tcttggttattgcctctttcaggacctaggagtgactttataaactgaaaccttttccttttgtcttag--------
||||||| |||||||| ||||||| ||| |||||  |||||||||||||  |||| |||||||| || || ||  | |||||  | || |||  ||| |||||||  |        | |||   ||||      |||| |      |   |  |   |  |  ||     | |    | || |||    | |     ||| |  || || |            
CATTTGTGAGTGAATGCGGTCTTCCTGAAGCTGGTTTGGACTATGGTGGTCTGTCAAAAGAGTTCCTAACAGATCTCTCAAAGTCCGCTTTTAGTCCAGAgtaagcataccgttaaacttttagcttttaaatcttttatcaaaaatgaagactggagagtactttcattcatgaaggcgattttgctgaatattttcttctatttctgacaacactcaatag

upper sequence: GLYMA19G37310.4 (Glycine max), 5'ss of exon 9
lower sequence: AT3G53090.2 (Arabidopsis thaliana), 5'ss of exon 7
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGAgtaagtttgaaaagctattttgtactttcttgctttttgtt--tcttggttattgcctctttcaggacctaggagtgactttataaactgaaaccttttccttttgtcttag-------
| ||||| | ||||| ||| |||| |||||||||||| |||||||||||  | || ||||||||| ||||||||||| |||||||||| ||| || | ||||||| |       ||  | | |   | | | |||| |  |  |||| ||| || | | || |||    |     |   |||||  | ||  |  |      ||| ||||         
CGTTTGTGAATGAATCTGGCCTTCCTGAGGCTGGCCTAGACTATGGTGGGCTTTCAAAAGAGTTTTTGACTGACATAACAAAAGCAGCTTTTGCTACTGAgtaagct-------cttctgtatgtatgcatactttattctagtctttgttgttacttgttccagtggattaagttttatttatttattggtatgtccattatttttcttttccaaaag

upper sequence: GLYMA19G37310.4 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 7
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGAgtaagtttgaaaagctattttgtactttcttgctttttgtttcttggttattgcctctttcaggacctaggagtgactttataaactgaaaccttttccttttgtcttag
||||| | ||||||||||| ||||  |||||||| ||||||||||| || || |  ||||||||  | ||||| ||| |||||||||| ||| |||| |||||||||| | |       ||| | ||   | |  ||| ||   |||||||   | |||| ||||      ||| | ||  |  | ||    |||               
CATTTATTAGTGAATGTGGCCTTCCAGAGGCTGGTCTGGACTATGGCGGCTTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGAgtaagtttaaga-------ttgcaattatat-caatttcttgtatggttatctgcgcttt-aggatt--atagttatttattttattgttgtcttag-------------

upper sequence: GLYMA19G37310.4 (Glycine max), 5'ss of exon 9
lower sequence: PP1S103_43V6.1 (Physcomitrella patens), 5'ss of exon 9
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGAgtaagtttgaaaagctattttgtactttcttgctttttgtttcttggttattgcctctttcaggacctaggagtgactttataaactgaaaccttttccttttgtcttag-------------------------------------
| ||||| |  ||   ||| |||   ||||| || || |||||||||||||||| |||||||||||| |||||| |  | || ||||| |||  ||| | |||| | |   |    |     |  | |  ||  ||     ||||  | |     | | |  | |  | | ||||  ||  | | |||||  ||     ||       ||                                     
CTTTTGTGAACGAGCTTGGACTTGCAGAGGCAGGTCTTGACTATGGTGGATTGTTTAAAGAGTTTCTTACTGACCTCGCCAAGGCAGCTTTTGATCCAGGgtaactgtttgacttcaggcgatcttcttatgtattaacactctttttgaacagatttatttgaaagt-gcagtgggttgctgacctgaa--ctacattttggagagcaggcacgaatttgtcagctgattatattgctgtatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193615826|gb|FK567346.1|FK567346
EST:     TTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGA                         ATATGGACTCTTT
genomic: TTGTCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCTCCCGAgtaagtttga ... tttgtcttagATATGGACTCTTT
EST: gi|193333283|gb|FK298817.1|FK298817
EST:     ATCAAAAGCAGCATTTTCTCCCGA                         ATATGGACTCTTTTCCCAAAACTCGACTTCAGACAGACTTCTAATTCCAAC
genomic: ATCAAAAGCAGCATTTTCTCCCGAgtaagtttga ... tttgtcttagATATGGACTCTTTTCCCAAAACTCGACTTCAGACAGACTTCTAATTCCAAC