1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACACCAAGATCCTGGTGTTGCAACATCACCAACCCGGCATCCAATTTCAGCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggattatttacctattgctgccaatcattgattttttcacacacttaggtcagtccattaaatttcaaaatgaaaattttcatgtatttttgttgaacag
species | Glycine max |
transcript | GLYMA19G35370.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATTTGGTTCGGTGEST: gi|26058982|gb|CA801896.1|CA801896
genomic: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTG
EST: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATTTGGGTCGGTGCTTGCTTCACGAGCAATTAGAGCAEST: gi|10847791|gb|BF071604.1|BF071604
genomic: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCA
EST: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACEST: gi|21889859|gb|BQ743072.1|BQ743072
genomic: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGAC
EST: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACEST: gi|208119661|gb|GD915200.1|GD915200
genomic: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGAC
EST: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATTTGGTTCGGTGCTTGCTTCACEST: gi|193686900|gb|FK632523.1|FK632523
genomic: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTGCTTGCTTCAC
EST: TATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACEST: gi|12690329|gb|BG156665.1|BG156665
genomic: TATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGAC
EST: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATCTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACEST: gi|26047106|gb|CA783997.1|CA783997
genomic: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGAC
EST: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAAC ATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGAC
genomic: GCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggatta ... tgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACACCAAGATCCTGGTGTTGCAACATCACCAACCCGGCATCCAATTTCAGCACACCAAGTAATGTATGAGCTGCGCATATATTCCCTCGAGGAGGCAACgtaaggattatttacctattgctgccaatcattgattttttcacacacttaggtcagtccattaaatttcaaaatgaaaattttcatgtatttttgttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG