Sequence
atgc intronic sequence ATGC exonic sequenceATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGCCATCAGGATCTGCTACTAACAGTGCTGACGAAGGAAGAGGAAAAGTTGCAGgtggatattatttcttctcacttggaatttggcttggctttttttaccgatcattcataagaatggtattttttttgtactgccag
Basic information
species | Glycine max |
transcript | GLYMA19G32010.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 10
ATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGCCATCAGGATCTGCTACTAACAGTGCTGACGAAGGAAGAGGAAAAGTTGCAGgtggatattatttcttctcacttggaatttggcttggcttttt----ttaccgatcattca-taagaatggtattttttttgtactgccag
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ATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATCAGGCTCGGCAACTCCTGCTAATGAAGAAGGACGAGGAAAAGTCGCTGgtaaagattgctttgatactctaaattattaataaaacaatgaaagatctcttatccctgacttactttggtacttttcctattgt-ctag
upper sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 9
ATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGCCATCAGGATCTGCTACTAACAGTGCTGACGAAGGAAGAGGAAAAGTTGCAGgtggatattatttcttctcacttggaatttggcttggctttttttaccga-tcattcataagaatgg-tattttttttgtactgccag-----
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ATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATCAGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGgtaaa--acaccactatgaaactcaaatctttatagaaaacattgacggtcttgtagccctgactgactattttcaatgccccatttctctag
upper sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 8
ATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGCCATCAGGATCTGCTACTAACAGTGCTGACGAAGGAAGAGGAAAAGTTGCAGgtggatattatttcttctcacttggaatttggcttggctttttttaccgatcattcataagaatggtattttttttgtactgccag
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ATTCAAGGGTATGAGACACATTCATTCAAGTCCAACTTTGATTCTTGGCCATCAGGATCAGCAGCAGGTGGTGCTGAGGAAGGAAGAGGAAAAGTAGCAGgtaatgaccactt--tcatacttag--tttaactggagttttttgggtaa-cattattaa--ttgtcaatctgtgggtaattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151395921|gb|EV265798.1|EV265798EST: ATCAGGATCTGCTACTAACGGTGCTGACGAAGGAAGAGGAAAAGTTGCAG CTTTGCTGAAGCAGCAAGGTATGGGTGTGAAAGGGGTGACAAAAACTACCC
genomic: ATCAGGATCTGCTACTAACAGTGCTGACGAAGGAAGAGGAAAAGTTGCAGgtggatatta ... gtactgccagCTTTGCTGAAGCAGCAAGGTATGGGTGTGAAAGGGGTGACAAAAACTACCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGCCATCAGGATCTGCTACTAACAGTGCTGACGAAGGAAGAGGAAAAGTTGCAGgtggatattatttcttctcacttggaatttggcttggctttttttaccgatcattcataagaatggtattttttttgtactgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA