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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAAgtaccaatttcttcccttgcttttgtcttctcagtctttctttatgaatttatatctttatatttactattattctaaaatcttggcattaaaag

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193399461|gb|FK361351.1|FK361351
EST:     TCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAA                         GACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
genomic: TCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAAgtaccaattt ... gcattaaaagGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
EST: gi|193608896|gb|FK566072.1|FK566072
EST:     TCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAA                         GACGCCCTCGATGGCATTGAATTTGTAAGAGGCTCTCCTACATCACAATGG
genomic: TCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAAgtaccaattt ... gcattaaaagGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
EST: gi|193387375|gb|FK349600.1|FK349600
EST:     TCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAA                         GACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTGCATCACAATGG
genomic: TCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAAgtaccaattt ... gcattaaaagGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
EST: gi|208324410|gb|GE125711.1|GE125711
EST:     AATCCTATGTGCAA                         GACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
genomic: AATCCTATGTGCAAgtaccaattt ... gcattaaaagGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
EST: gi|193483807|gb|FK449326.1|FK449326
EST:     ATGAAATTGATACATCATCCCATAGAATCCTATGTGCAA                         GACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
genomic: ATGAAATTGATACATCAT-CCATAGAATCCTATGTGCAAgtaccaattt ... gcattaaaagGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
EST: gi|207842537|gb|GD815929.1|GD815929
EST:     AATTGATACATTCATCCATAGAATCCTATGTGCAA                         GACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
genomic: AATTGATACA-TCATCCATAGAATCCTATGTGCAAgtaccaattt ... gcattaaaagGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
EST: gi|193594010|gb|FK546252.1|FK546252
EST:     GATACATCATCCATAGAATCCTATGTGCAA                         GACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG
genomic: GATACATCATCCATAGAATCCTATGTGCAAgtaccaattt ... gcattaaaagGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGG