1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGTTGTTGAACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctcttctcataattagactaaatattagtctgttgaagtgaagatagcttctcattacacttaatattatttttatatattctttacctcttt...
species | Glycine max |
transcript | GLYMA19G29180.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|6071898|gb|AW101285.1|AW101285
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|10236584|gb|BE805472.1|BE805472
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATCGTCAGGCTGTGCCTTCEST: gi|192328366|gb|FK020077.1|FK020077
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGCTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|21256567|gb|BQ453455.1|BQ453455
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16276951|gb|BI942126.1|BI942126
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|207772143|gb|GD743548.1|GD743548
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16277987|gb|BI942667.1|BI942667
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16106130|gb|BI893870.1|BI893870
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: ACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCTTGTTTTAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTEST: gi|6069807|gb|AW099413.1|AW099413
genomic: ACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAG-AACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTT
EST: AACTTCA-GAAGAGCTTGATATTGATGTTCTTGT-CATGGAGA-CCAGAG AGAA-TGATATGGT-GAGTACTTCG-TGAGCAAT-GTCAG-CTTTEST: gi|16278622|gb|BI942999.1|BI942999
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTT
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16277989|gb|BI942668.1|BI942668
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16282151|gb|BI944864.1|BI944864
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16278722|gb|BI943056.1|BI943056
genomic: AAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16349493|gb|BI975088.1|BI975088
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16278501|gb|BI942937.1|BI942937
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|15589886|gb|BI674502.1|BI674502
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|19938578|gb|BQ081786.1|BQ081786
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: CTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16277874|gb|BI942608.1|BI942608
genomic: CTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16278558|gb|BI942967.1|BI942967
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16276953|gb|BI942127.1|BI942127
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|298194309|gb|HO040957.1|HO040957
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|151404730|gb|EV274544.1|EV274544
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: GATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16997293|gb|BM086665.1|BM086665
genomic: GATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|151406833|gb|EV276648.1|EV276648
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: CATGGAGAACCAGAG AGAAGTGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|15814429|gb|BI786704.1|BI786704
genomic: CATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16348451|gb|BI974046.1|BI974046
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|15288042|gb|BI471933.1|BI471933
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16278888|gb|BI943146.1|BI943146
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|19937752|gb|BQ081407.1|BQ081407
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: CTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16276931|gb|BI942116.1|BI942116
genomic: CTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|15589731|gb|BI674347.1|BI674347
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: GCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|15589791|gb|BI674407.1|BI674407
genomic: GCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|19938333|gb|BQ081671.1|BQ081671
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: CTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTCEST: gi|16347739|gb|BI973334.1|BI973334
genomic: CTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
EST: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAG AGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
genomic: AACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctc ... ttcactgcagAGAAATGATATGGTTGAGTACTTCGGTGAGCAATTGTCAGGCTTTGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGAAGAGTATGTTAAGTCAATTAAGGAGGAAATTCGCAAAGTTGTTGAACTTCAAGAAGAGCTTGATATTGATGTTCTTGTTCATGGAGAACCAGAGgtcagctctcttctcataattagactaaatattagtctgttgaagtgaagatagcttctcattacacttaatattatttttatatattctttacctcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA