Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCTTTCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGTTTCAGgtattttcttggctctgtaagaaccaaaatctcacttgtagtttgtttatttccagtagccctttttgattttttttaaatattcacctgtctgctttgtttatag
Basic information
species | Glycine max |
transcript | GLYMA19G29010.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G29010.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g49420.2 (Oryza sativa), 5'ss of exon 8
GTTGCTTTCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGTTTCAGgtattttcttggctctgtaagaaccaaaatctcacttgtagtttgtttatttccagtagcc-ctttttgattttttttaaatattcacctgtctgctttgtttatag
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GTTGCAACTACTCTGGTTCCTCTCCTCAAATTCTATTTTCATGAAGAAGTTAGGAAGGCAGCCGTTTCAGgtctgcaactacccttttcagtgt---attctccattatttttagcatttttctcaaagtgacattgtgttatctccctag--------------------------
upper sequence: GLYMA19G29010.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g38760.1 (Oryza sativa), 5'ss of exon 9
GTTGCTTTCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGTTTCAGgtattttcttggctctgtaagaaccaaaatctcacttgtagtttgtttatttccagtagccctttttgattttttttaaatattcacctgtctgctttgtttatag
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GTTGCTCCTACATTGGTTCCACTCCTTAAATTTTACTTTCATGAGGAAGTGAGGAGAGCTGCTGTTGCAGgtatttgat-gttttagtatgattttatcttttgccttatggatttgcattttaaaagtatagttccaacaacaatgcag--------------------------
upper sequence: GLYMA19G29010.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 9
GTTGCTTTCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGTTTCAGgtattttcttggct-ctgtaagaaccaaaatctcacttgtagtttgtttatttccagtagccctttttgattttttttaaatattcacctgtctgctttgtttatag
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GTTGCTCCTACATTGGTTCCTCTTCTTAAATTTTATTTTCACGAGGAAGTTAGGAAGGCTGCTGTTTCAGgtagtaacctgaccattgtagttgtc----ttcgtcttgttgaccattcaattgtg--agactatatcaaatttgttgtgttgttgatttttgtccatag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20449243|gb|BQ253367.1|BQ253367EST: AGCAGTTTCAG CCATGCCGGAACTGTTGTCCTCGGCAAAATCAGCTGTAGTGAAGGGACAAT
genomic: AGCAGTTTCAGgtattttctt ... ttgtttatagCCATGCCGGAACTGTTGTCCTCGGCAAAATCAGCTGTAGTGAAGGGACAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCTTTCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGTTTCAGgtattttcttggctctgtaagaaccaaaatctcacttgtagtttgtttatttccagtagccctttttgattttttttaaatattcacctgtctgctttgtttatag
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - AGAAGT