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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagtggctctttttcaattgctataggatatacatgttgtaatccctgggctaggaatataatgaatcaatatcattgtctctattattttgtt...

Basic information

species Glycine max
transcript GLYMA19G28780.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28780.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 9
GTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagtggctctttttcaattgctatagga-----tatacatgttgtaatccctgggc------taggaatat--------aatgaatcaatatcattgtctctatt-attttgtt----------------
|| ||||||||||| || ||||| |||||||||||||| || || |||||||||||| |||| ||||||||||||||||        | ||||     |||||   ||     | | |||| ||   |   ||         |||||||||        ||  |||  | ||  |      |||| |   ||||                
GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATGgtatgtttacttgttttttgattatgctacttgaatgtttttccatgatgctctgtttgattaatccgtaggaatatttgagggcaagaaatggaaattctgaatcttattgagggtgtttgggttggtatggtag