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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTTGATGTACTGGTAGGCCTCATGGCGGAAAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaattaaaagcaccctttttttaactcatgtttatatacgccttccaaattgaatgcttccaacaatcatatcagttctaggttgtaagcttt...

Basic information

species Glycine max
transcript GLYMA19G01470.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 10
AAGAGCTTGATGTACTGGTAGGCCTCATGGCGGAAAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaat----taaaagcacc----ctttttttaactcatgtt-tatatacgccttccaaattgaatgcttccaacaatcatatcagttctaggttgtaagcttt----------
|||| || ||    |  || || |||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| |||||| |  |||  ||  | |||||    | ||    |||||| |      |   || ||||   |  | |||  |   || |        |  ||   || ||| ||| || |  | |    | ||| ||          
AAGAACTCGACACTCAAGTGGGTCTCATGGCCGAGAAGAAGATCAAGGGTTTTGCCATCAGTGAAACAGCCTTTGTCATATTCATCATCAATGCCTCAAGgtatacacgataagataaaaggaataaagcaggttataaccattaatatatgaaaaactacatggcctgacactgaaaataatgata-cactaatcgaa-atgagcgttgaacatacag

upper sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 9
AAGAGCTTGATGTACTGGTAGGCCTCATGGCGGAAAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaattaaaagcaccctttttttaactcatgtttatatacgccttccaaattgaatgcttccaacaatcatatcagttc-taggttgtaagcttt
||||||||||    |  || ||||||||||| || ||||| || ||||||||||| || ||||| ||||||||||| |||||| |  |||||||  ||||||||   |||   |||  |      | ||||   |    | ||   |  ||    |||||  |  |          |  |  | | | |  || |      
AAGAGCTTGACACTCATGTGGGCCTCATGGCAGAGAAGAAGATCAAGGGTTTTGCTATAAGTGAAACAGCTTTTGTCATATTCATCGTCATGGCTTCCAGgtaa--acaaaacaaaataatggaatattaaaatagacctttaattgaattggttattgaccgtatttggtgggtttggccatgcgtggaatgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000829|gb|BI321643.1|BI321643
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254348900|gb|GR852579.1|GR852579
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254332514|gb|GR846452.1|GR846452
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|16341633|gb|BI967228.1|BI967228
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|120531316|gb|EH259449.1|EH259449
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254336836|gb|GR843015.1|GR843015
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|15000650|gb|BI321464.1|BI321464
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|7926022|gb|AW832048.1|AW832048
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|6719817|gb|AW307464.1|AW307464
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|120492176|gb|EH220343.1|EH220343
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|120531173|gb|EH259306.1|EH259306
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254317376|gb|GR826321.1|GR826321
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254348901|gb|GR852580.1|GR852580
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254319857|gb|GR830881.1|GR830881
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|17401344|gb|BM178126.1|BM178126
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|13479194|gb|BG508537.1|BG508537
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254339407|gb|GR848124.1|GR848124
EST:     TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGA-GAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
EST: gi|254344326|gb|GR855304.1|GR855304
EST:     CTCATGGCAACCAG                         GAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA
genomic: CTCATGGCAACCAGgtaagagcaa ... ccatttgcagGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATA