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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGAAGAAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctggattctttccttgtgacaagaacatcaaggaaacaaagcatacctaattgttttactagttacgtttttgctttattgctgaagaccttg...

Basic information

species Glycine max
transcript GLYMA18G52160.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193658763|gb|FK600796.1|FK600796
EST:     AAGAAGGTCATGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: gi|208306353|gb|GE104432.1|GE104432
EST:     AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: gi|208259278|gb|GE053820.1|GE053820
EST:     AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: gi|208178308|gb|GD978261.1|GD978261
EST:     AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGTAAGTTT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAG-AAGTTT
EST: gi|19053108|gb|BM731775.1|BM731775
EST:     AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: gi|193667121|gb|FK608029.1|FK608029
EST:     AAGGAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCTT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: gi|207845857|gb|GD819878.1|GD819878
EST:     AGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTACCCAAAA                         GTATATGTGAAATCTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCC
genomic: AGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATT-CCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCC
EST: gi|207793675|gb|GD766743.1|GD766743
EST:     AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: gi|193411238|gb|FK377715.1|FK377715
EST:     AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: gi|6070794|gb|AW100181.1|AW100181
EST:     AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA                         GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATGAAGAAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctggattctttccttgtgacaagaacatcaaggaaacaaagcatacctaattgttttactagttacgtttttgctttattgctgaagaccttg

- - - - AAGAAG
- - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaacaa