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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCAGAGTGTCAAGAGCACAGTTTCCTTATCTAGATTTGTCTCCTCTCTTTTCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTAATGTGGGGCAggtaacttccaatcatacatgtgttcagctaatttttttttggaaggccaaccaaaatttgataaatatgatgtgttcagctaaaatagaactcaactttgtgagtaaacagtagaatagggaaaggggtaagagaatcttatccataaacaaccaaattaactttttctttttccttttcccaccatgctgctaca

Basic information

species Glycine max
transcript GLYMA18G52130.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52130.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 9
CTTTTCAGAGTGTCAAGAGCACAGTTTCCTTATCTAGATTTGTCTCCTCTCTTTTCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTAATGTGGGGCAggtaacttccaatcatacatgtgttcagctaatttttttttggaaggccaaccaaaatttgataaatatgatgtgttcagctaaaatagaactcaactttgtgagtaaacagtagaatagggaaaggggtaagagaatcttatccataaacaaccaaattaactttttctttttccttttcccaccatgctgctaca
 | ||||| |||||||||   |    ||| || |  || ||  |||| ||  ||||||||||||| ||   ||||||||| |||||||| ||||||||||||| |||     |  |   | | | |||  ||         || | |  ||  |||   ||| |  ||  |       |   |||  || |    |  || ||| ||    || | |                                                                                
-TATTCAGGGTGTCAAGACTGCCACCTCCATACCAGGACTTAGCTCCCCTTCTTTCCCAAGTTGTTTCCAGCTTTGGTGCCAACCGTGTCATGTGGGGCAGgtgactcgtctttctttctttctacagaaaaagaaaaaaagggaagaaaatgaaatgatgacatgtaacaga-----aaaaaaacgagcagcttatgttttgaatattttgttgcag-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209696783|gb|BW680404.1|BW680404
EST:     CTTTTCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTAATGTGGGGCA                         GCGATTTTCCATTTGTTGTTGCTGAATGTGGTTACAAAGGAGCCAAAGAAG
genomic: CTTTTCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTAATGTGGGGCAggtaacttcc ... tgctgctacaGCGATTTTCCATTTGTTGTTGCTGAATGTGGTTACAAAGGAGCCAAAGAAG
EST: gi|209711039|gb|BW681349.1|BW681349
EST:     CTTTTCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTAATGTGGGGCA                         GCGATTTTCCATTTGTTGTTGCTGAATGTGGTTACAAAGGAGCCAAAGAAG
genomic: CTTTTCCCAAGTTGTCTCTCACTTTGGTGCTAACCGTGTAATGTGGGGCAggtaacttcc ... tgctgctacaGCGATTTTCCATTTGTTGTTGCTGAATGTGGTTACAAAGGAGCCAAAGAAG