1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgtgggtttattttacccctaattgtttttaacatttcattagtaatctgtgactgtctgtctctattttctaattaagtcattttgttcatctaattcag...
species | Glycine max |
transcript | GLYMA18G49770.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATG GATTCCGGTTTTAATCAAATGCATTCCAGTGAACTTGCTTCTTCAGTTGTTEST: gi|207718492|gb|GD700064.1|GD700064
genomic: GATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgtgggtttat ... gattgcttagGATTCCGGTTTTAATCAAATGCATTCCAGTGAACTTGCTTCTTCAGTTGTT
EST: GATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATG GATTCCGGTTTTAATCAAATGCATTCCAGTGAACTTGCTTCTTCAGTTGTTEST: gi|151395613|gb|EV265490.1|EV265490
genomic: GATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgtgggtttat ... gattgcttagGATTCCGGTTTTAATCAAATGCATTCCAGTGAACTTGCTTCTTCAGTTGTT
EST: GATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATG GATTCCGGTTTTAATCAAATGCATTCCAGTGAACTTGCTTCTTCAGTTGTT
genomic: GATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgtgggtttat ... gattgcttagGATTCCGGTTTTAATCAAATGCATTCCAGTGAACTTGCTTCTTCAGTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgtgggtttattttacccctaattgtttttaacatttcattagtaatctgtgactgtctgtctctattttctaattaagtcattttgttcatctaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA