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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGGAGTATCCGCACTTGTTGATCTCTGCTCTTCATCAGTTTCAAAAATGGCACGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGgtaattaatttgattaaaacgtgctgtgtgcttatcacccttttggtttgtttcttagaatgcttattttcttatttgattaatgtcctttattgaagtt...

Basic information

species Glycine max
transcript GLYMA18G48840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48840.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G60350.1 (Arabidopsis thaliana), 5'ss of exon 8
AAGGTGGAGTATCCGCACTTGTTGATCTCTGCTCTTCATCAGTTTCAAAAATGGCACGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGgtaattaatttgattaaaacgtgctgtgtgcttatcacccttttggtttgtttcttagaatgcttattttcttatttgattaatgtcctttattgaagtt
|||| |||||    ||||||||| | ||||| || || || ||||| |||||||| || || |||||||| || |||||||| ||||||||||| || |||||  |||    | | ||   | ||||   | ||||  | |||  | |  |||       ||  | |  |||||| |   || | |              
AAGGGGGAGTTGTAGCACTTGTTCAGCTCTGTTCGTCTTCTGTTTCCAAAATGGCTCGTTTTATGGCTGCATTAGCATTGGCATACATGTTTGATGGAAGgtacgtaa---aacttaat--tactgtaatcatatccacatttaaggtaatttgcagatctgactttgatcttatctatctattataacag---------

upper sequence: GLYMA18G48840.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G44900.1 (Arabidopsis thaliana), 5'ss of exon 9
AAGGTGGAGTATCCGCACTTGTTGATCTCTGCTCTTCATCAGTTTCAAAAATGGCACGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGgta-attaatttgattaaaacgtgctgtgtgcttatcacccttttggtttgtttcttagaatgcttattttcttatttgattaatgtcctttattgaagtt
|||| |||||  | || |||||| |  | || || || || || ||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||||| |||||| |    | ||| |  |   |    ||| |   ||   |  |  ||| |   |      ||||    |  ||||  |  ||  |        
AAGGAGGAGTTCCAGCTCTTGTTCACTTGTGTTCGTCTTCTGTCTCAAAAATGGCTCGATTCATGGCTGCATTGGCTTTGGCATACATGTTTGATGGAAGgtatattaatat----ataacttagttaataaacatcccaaattcaatccgactctcacggt------tttcgatctgaattatcgatctgcaacag----

upper sequence: GLYMA18G48840.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0021g01810.t01 (Vitis vinifera), 5'ss of exon 10
AAGGTGGAGTATCCGCACTTGTTGATCTCTGCTCTTCATCAGTTTCAAAAATGGCACGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGgtaattaatttgattaaaacgtgctgtgtgct--tatcaccctt---ttggtttgtttcttagaatgcttattttcttatttgattaatgtcctttattgaagtt
|||| |||||  | || |||||  |||| ||  |||| ||||| |||||||||||||| ||||||||||| |||||| | || ||||||||||| || ||||| ||| |   | |   | ||  |  |  |   |||    ||    |   | | |||   | | | |||        |       |    ||||  ||      
AAGGGGGAGTGCCAGCCCTTGTCCATCTTTGTGCTTCCTCAGTATCAAAAATGGCACGCTTCATGGCTGCATTGGCACTTGCATACATGTTTGATGGAAGgtatttactcccaattctatgtagttagacccaatattgtgctcaagtcactctctttgccaaattcctttgaaaagcacccccccaccccccttccttt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16997277|gb|BM086649.1|BM086649
EST:     ATGGCACGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGGCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGGCACTTCATCTGAAAGTATTTCTAAGAG
EST: gi|20812629|gb|BQ297107.1|BQ297107
EST:     ATTGGCTTACATGTTTGACGGGAG                         AATGGATGAATATGCTTTAGTAGGCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATTGGCTTACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGGCACTTCATCTGAAAGTATTTCTAAGAG