1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAATCAACTTAAACATTCCTTGTGTTGACTTGCACACATTGAACCAACATGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAGtaagtatctaatccttgccaaaatttatgttgttatctagttggtgtcttgattggctgattgtattacagg
species | Glycine max |
transcript | GLYMA18G46630.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAG TGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGATEST: gi|209718326|gb|BW666189.1|BW666189
genomic: TGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAGtaagtatcta ... gtattacaggTGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGAT
EST: TGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGATTAGTCTGGCAAG TGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGATEST: gi|7686438|gb|AW757086.1|AW757086
genomic: TGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAGtaagtatcta ... gtattacaggTGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGAT
EST: TGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAG TGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGAT
genomic: TGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAGtaagtatcta ... gtattacaggTGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATCAACTTAAACATTCCTTGTGTTGACTTGCACACATTGAACCAACATGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAGtaagtatctaatccttgccaaaatttatgttgttatctagttggtgtcttgattggctgattgtattacagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT