Sequence
atgc intronic sequence ATGC exonic sequenceCTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGgtacttgcaaaactaattttgatctaatccttattgggtatccagtttgttttgttgttctatcatgctcctcattattgatactttctgctttaacatggctgccaaaagactgtccagttctgtttcacgtgaaacttttttgtctggtgggcag
Basic information
species | Glycine max |
transcript | GLYMA18G46340.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G46340.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G00570.1 (Arabidopsis thaliana), 5'ss of exon 9
CTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGgtacttgcaaaactaattttgatctaatccttat-tgggtatccagtttgttttgttgttctatcatgctcctcattattgatactttctgctttaacatggctgccaaaagactgtccagttctgtttcacgtgaaacttttttgtctggtgggcag
||||||||||||| |||||||||||||||||||| ||| ||||||||| || | || || ||| |||| |||||||| || ||||| |||||||| ||||||||| | | | || ||| | ||| | | ||| | || || | | | |||| || |||||| | ||| || | ||| |
CTGGTGTTGCACTGGCTGGACTATTGGGAACTGTAAGAGCTCAAGGTCGGCCGATATCCGACTTTGTGAACCAAAAGATTGTTGTGGTGGGAGCTGGAAGgtacttggatattcacttgaaatccttttcttctgtatttatatatttacattaactttcttctcat-cttctcattgt--atatttcttttattactttcag-------------------------------------------------------
upper sequence: GLYMA18G46340.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 9
CTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGgtacttgc---aaaactaattttg---atctaatcctta-------ttgggtatccagtttgttttgttgttctatcatgctcctcattattgatactttctgctttaacatggctgccaaaagactgtccagttctgtttcacgtgaaacttttttgtctggtgggcag
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CTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAAGGTCGACCGTTGACTGACTTTGTCAACCAAAAGATAGTTGTAGTTGGAGCAGGAAGgtattttttttagaagtgaatttgtgaatgagaacttttggtgaactttggcttcagctgtatgtgcttgttattggaggcttctctttacttctttgtgttcttttatctggactgcag--------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254315925|gb|GR825734.1|GR825734EST: GAAACAAAAGATAGTCGTGGTTGGAGCTGGGAG TGCAGGGCTTGGTGTTCTCAGCATGGCTGTCCAGGCTGTTTCAAGGATGTC
genomic: GAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGgtacttgcaa ... tggtgggcagTGCAGGGCTTGGTGTTCTCAGCATGGCTGTCCAGGCTGTTTCAAGGATGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGTGTTGCACTTGCTGGACTATTGGGAACTGTTAGATCTCAAGGTCAACCATTGTCTGATTTTTTGAAACAAAAGATAGTCGTGGTTGGAGCTGGGAGgtacttgcaaaactaattttgatctaatccttattgggtatccagtttgttttgttgttctatcatgctcctcattattgatactttctgctttaacatggctgccaaaagactgtccagttctgtttcacgtgaaacttttttgtctggtgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT