Sequence
atgc intronic sequence ATGC exonic sequenceCAATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGGtaaagttaattgtgttctttatccttgtgttttataagcttcttgaaagttgcatcctattggttgtggattatagaatctgagtgtaattattatgtgcactataga
Basic information
species | Glycine max |
transcript | GLYMA18G45960.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G61160.2 (Arabidopsis thaliana), 5'ss of exon 9
-CAATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGGtaaagtta-attgtgttctttatccttgtgttttataagcttcttgaaag---ttgcatcctattggttgtggattatagaatctgagtgtaattattatgtgcactataga
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CCTCTATTCCCTGGAGAAACCAGTGTTGATCAATTGGTGGAGATCATTAAGgtaacaacatattggtttttttattacttttatctgttgtttttttgggggggctcagattcttagagttgttgtataaacag------------------------------
upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 5'ss of exon 8
-CAATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGGtaaagttaattgtgttctttatccttgtgtt------ttataagctt-cttgaaagttgcatcctattggttgtggattatagaatctgagtgtaattattatgtgcactataga----------
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CCTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggc-acaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgac-tgttgcgggagtgttatgatgctgtggagtgtatgttat-tgaggaaaagttttgtggcag
upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 7
-CAATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGGtaaagttaa--ttgtgttctttatccttgtgttttataagcttcttgaa------agttgcatcctattggttgtggattatagaatctgagtgtaattattatgtgcactataga--------------
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CCTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAGgtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcag
upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 5'ss of exon 8
-CAATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGGtaaagttaattgtgttctttatccttgtgtt------ttataagctt-cttgaaagttgcatcctattg-------gttgtgg-attatagaatctgagtgtaattattatgtgcactataga-----
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CCTCTGTTCCCCGGAGAGAGTGGAGTGGATCAATTGGTGGAGATTATCAAGgtagggc-acaggcggtgcacggcgttgtgttgaagggtggcgtacttgcttgctggttgtgac-tgttgcgggggtgttatgatgctgtggagtgtgagtatgttattgaggagtacttgtgtggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151396011|gb|EV265888.1|EV265888EST: AATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGA TCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACA
genomic: AATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGGtaaagttaat ... gcactatagaTCTTGGGAACACCGACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGTTTCCCGGAGAGAGTGGGGTTGATCAATTGGTAGAGATCATTAAGGtaaagttaattgtgttctttatccttgtgttttataagcttcttgaaagttgcatcctattggttgtggattatagaatctgagtgtaattattatgtgcactataga
- - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - AGATCA