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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTATCTGAGTTTTAAAGACTGgtaagttcaaagctactatgctttattgacgtaagtcatccatatttcgatcttgtcattcctaaaaaattgaagatctttcaattttgtcgtgcctgga...

Basic information

species Glycine max
transcript GLYMA18G43420.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43420.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 5'ss of exon 10
TGACGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTATCTGAGTTTTAAAGACTGgtaagttcaaa---gctactatgctttattgacg-taagtcatccatatttcgatcttgtcattcctaaaaaattgaagatctttcaattttgtcgtgcctgga
  || ||  ||||| ||| | ||||| | || ||||||||||||   ||| ||| | |||||||||||||||| ||||| || || |||||||| || ||||||||| |||   ||  | || | || | || | |  |  |  | |  | |  | | || | |  | | |  ||     | | |  | |||   |    ||  
AAACAGATGTTACTGCTGGAATGCTTTTGAAGGATGCTGCTTATACAGCTGCTGGTCATGTTTATTATGAACTTTCAAATTACCTTAGTTTTAATGAATGgtaagttaaaaagagcagcaataccttgtagaagattggatagtcttcatacattttagttagtgttgacatttttc---tatgttgaatttagtgaagatga-

upper sequence: GLYMA18G43420.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G151905_T05 (Zea mays), 5'ss of exon 10
TGACGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTATCTGAGTTTTAAAGACTGgtaagttcaaagctactatgctttattgacgtaagtcatccatatttcgatcttgtcattcctaaaaaattgaagatctttcaattttgtcgtgcctgga--
  || ||  ||||| | | | ||||| | || |||||| | |||   ||| | |   |||||||||||||||| || |||||||| |||||||| || |||||||||   | || | |||  || || | | || | || | | | |   |     ||||   |||   |   | || |||  || ||  | | | ||    
AAACAGAGGTTACTGCAGGAATGCTTTTAAAGGATGCTTCCTATACAGCTGCCGGGCATGTTTATTATGAACTTTCGAACTATCTCAGTTTTAATGAATGgtaagtttgtaacttc-atgaattcttaatgaaaatgatacctgtcttcgtagaaccatttgcaaatgctcttacatgttttcatgttagcat-cttgtgct

upper sequence: GLYMA18G43420.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 10
TGACGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTATCTGAGTTTTAAAGACTGgtaagttcaaag----ctactat----gctttattgacgtaagtcatccatatttcgatcttgtcattc--ctaaaaaattgaagatctttcaa-ttttgtcgtgcctgga-----------------------------------------
| || ||||| ||||||||| |||||||||||||||| || || | ||||||||| ||||| || ||||| ||||| || ||||| | ||| | ||| ||||| | ||        ||| | |       || ||  | |  |   |  | || | || | | |||||   |||   |   |||  |     || |||||    | |  |                                          
TTACTGAAATAACTCCTGCACTGCTTCTTAAAGATGCGGCATACGCTGCTACTGCATATGTCTACTATGAGCTCTCGAATTATCTTAATTTCAGAGATTGgtatgctcttgatcttctaatgtctgaatcttttttccatctgctctaaacatcttgaccct-tcattttgctagccagcagaatgtgacaaaagttttgattagtcaagtaattattgtacccttcttaatgatcggatgattggctgcag

upper sequence: GLYMA18G43420.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0217g00060.t01 (Vitis vinifera), 5'ss of exon 9
TGACGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTATCTGAGTTTTAAAGACTGgtaagttcaaagct-actatgctttattgacgtaagtcat--ccatatttcg---atcttgtcattcctaaaaaat-tgaagatctttcaattttgtcgtgcctgga
| || ||||| ||||| |  |||||||||||||| ||||||||| | ||| | ||  ||||||||||||| || || ||||| ||||| || ||||| ||||| || ||    | ||  |  | |||||   |  ||  |    || | |     |  || ||| |  ||   | | | |  ||  ||| ||| | |          
TCACTGAAATCACTCCAGGGTTGCTTCTTAAAGACGCTGCTTATAGCGCTGCGGCACATGTTTATTATGAGCTTTCCAACTACCTGAGCTTCAAAGATTGgtatgtccatcattcacactattatattggtatttgttctaatgatgtcttacacagtttttcagttttacgtagtataattattattccattgtttttc-------