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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTGTATTTGGAGGTTTCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatcatcactacttgaatttcttttataaaattatgcaatgagttttcatgagcaaataatgttatattcttttattatattattcaatttaacagaactcatgcatggactaatatttatttgttatggtgctaactaaccatttag

Basic information

species Glycine max
transcript GLYMA18G42940.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522123|gb|BU080934.1|BU080934
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|207733315|gb|GD710075.1|GD710075
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|192330011|gb|FK020827.1|FK020827
EST:     GCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAA-CAATGTGGACAAG-A                         GTGGTGAAGCTGGAT
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGAT
EST: gi|10255632|gb|BE823398.1|BE823398
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|51335245|gb|CO979111.1|CO979111
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|192330012|gb|FK020828.1|FK020828
EST:     GCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|208038051|gb|GD834091.1|GD834091
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|208206230|gb|GE002063.1|GE002063
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCA
genomic: -CAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCA
EST: gi|208160707|gb|GD960487.1|GD960487
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGTTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGGGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|7041830|gb|AW471724.1|AW471724
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|6964045|gb|AW432738.1|AW432738
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: gi|10253189|gb|BE820955.1|BE820955
EST:     TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA                         GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTGTATTTGGAGGTTTCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatcatcactacttgaatttcttttataaaattatgcaatgagttttcatgagcaaataatgttatattcttttattatattattcaatttaacagaactcatgcatggactaatatttatttgttatggtgctaactaaccatttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT