Sequence
atgc intronic sequence ATGC exonic sequenceATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgcattcacaagtatacggtataggatgattttataaataaattgcatagtagaattttttattttcaccttttacttcgaatgctgacctcac...
Basic information
species | Glycine max |
transcript | GLYMA18G27710.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 8
ATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgcattcacaagtatacggtatagga-tgattttataaataaattgcatagtagaattttttattttcaccttttac-ttcgaatgctgacctcac------------
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TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACGTATTCGCAAGgtaac-tgcaatcaaaacaatcatacatctgagtttcttttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacag
upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 8
ATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgcattcacaag---tatacggtataggatgattttataaataaattgcatagtagaattttttattttcaccttttacttcgaatgctgacctcac--
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TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTCTATGATTATGCACATATTCGCAAGgtaac-tgcaatcacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagt--atttgacag
upper sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 8
ATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgcattcacaagtatacggtataggatgattttataaataaattgcatagtagaattttttattttcaccttttacttcgaatgctgacctcac-----------------------------------------
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TTGGAAAAAAGTGCCACACTCTTCAGACCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCgtctctatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120533930|gb|EH262063.1|EH262063EST: CTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAG GTTTGTGATAAACAGAAAGCTATATTATTGGCAGATATGGCACACATCAGT
genomic: CTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgca ... catgttacagGTTTGTGATAAACAGAAAGCTATATTATTGGCAGATATGGCACACATCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGAGAAATCAGCAACACTCTTCAGGCCAAAATTAATTGTTGCTGGAGCTAGCGCTTATGCACGTCTGTATGATTATGAACGTGTACGCAAGgtaatatgcattcacaagtatacggtataggatgattttataaataaattgcatagtagaattttttattttcaccttttacttcgaatgctgacctcac
- - - - - - - - - - - - - - - - - - - - - - GGAGCT