1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAAAGTTTTCGTAGTACATGGTGGTCTTTTTAGTGTTGATGGAGTCAAAGTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaatccttttttgttgtctctaattgatctcccagttatctgcacatatctaaatccctctaaaccttccattcttgcacttcatagactaaacccctctggctttttcacccttagtattttagttttatttacctatgtttggtatgtgtagg
species | Glycine max |
transcript | GLYMA18G12440.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGG GTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGGEST: gi|58017779|gb|CX704521.1|CX704521
genomic: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaat ... tatgtgtaggGTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGG
EST: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGG GTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGGEST: gi|18040553|gb|BM308847.1|BM308847
genomic: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaat ... tatgtgtaggGTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGG
EST: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGG GTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGGEST: gi|58024761|gb|CX711502.1|CX711502
genomic: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaat ... tatgtgtaggGTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGG
EST: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGG GTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGGEST: gi|23730805|gb|BU763508.1|BU763508
genomic: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaat ... tatgtgtaggGTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGG
EST: CTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGG GTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGGEST: gi|58021121|gb|CX707863.1|CX707863
genomic: CTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaat ... tatgtgtaggGTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGG
EST: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGG GTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGGEST: gi|9564188|gb|BE473697.1|BE473697
genomic: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaat ... tatgtgtaggGTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGG
EST: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTGCTGAAGAAGG GTTGATGTGTGAATTGCTCTGG
genomic: GTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaat ... tatgtgtaggGTTGATGTGTGAATTGCTCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGTTTTCGTAGTACATGGTGGTCTTTTTAGTGTTGATGGAGTCAAAGTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaatccttttttgttgtctctaattgatctcccagttatctgcacatatctaaatccctctaaaccttccattcttgcacttcatagactaaacccctctggctttttcacccttagtattttagttttatttacctatgtttggtatgtgtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG