1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGATAAAGAAAGAGTGCAAGCTACAAGAGATTTATCGAAGTGCATTTTAAAGCATCGTGCTTCTGCAGATTCCCTTCCAACCCAGGATAAAGAACTGGtacaataagatttaggctagtatatgcttttgtgattatgatgctgcccttaagatcagctttcatgtgatgattttattgtttaga
species | Glycine max |
transcript | GLYMA18G11520.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATAAAGAACTGA TCATCAATGAGTGCAATAAAGTGGAGCAGTGG-TGGAAGAGAAGATCCAGCEST: gi|11274558|gb|BF324901.1|BF324901
genomic: ATAAAGAACTGGtacaataaga ... attgtttagaTCATCAATGAGTGCAATAAAGTGGAGCAGTGGTTGGAAGAGAAGATCCAGC
EST: AAAGCATCGTGCTTCTGCAGATTCCCTTCCAACCCAGGATAAAGAACTGA TCATCAATGAGTGCAATAAAGTGGAGCAGTGGTTGGAAGAGAAGATCCAGC
genomic: AAAGCATCGTGCTTCTGCAGATTCCCTTCCAACCCAGGATAAAGAACTGGtacaataaga ... attgtttagaTCATCAATGAGTGCAATAAAGTGGAGCAGTGGTTGGAAGAGAAGATCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATAAAGAAAGAGTGCAAGCTACAAGAGATTTATCGAAGTGCATTTTAAAGCATCGTGCTTCTGCAGATTCCCTTCCAACCCAGGATAAAGAACTGGtacaataagatttaggctagtatatgcttttgtgattatgatgctgcccttaagatcagctttcatgtgatgattttattgtttaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC