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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGtgagtaaacaggtttcttttttgtttctaaacttggttctgacatggaagtttcttttaattataactgatcataatatctgcacttgaccagg

Basic information

species Glycine max
transcript GLYMA18G08180.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 9
-TACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGtgag-taaacaggtttcttttttgtttctaaacttggttctgacatggaagtttcttttaattataactgatcataatatctgcacttgaccagg
 || | || ||||| ||||| ||||| ||| |  ||||||| || ||||||||||| || || ||||||||||||||| |  ||||  | | |  |    || |||   |  || | |    ||||   ||      |  |||   || |  ||||   |  |   |  | || | ||| 
ATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGgtaggattattaaagctcatttaaatggctga-ccaaattctcctatcacgtctcatttctgttgt--ctgagtttttttcttatattt-atcag-

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 9
-TACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGtgagtaa--------acaggtttcttttttgtttctaaacttggt--tctgacatggaagtttcttttaatta------taactgatcataatatctgcacttgaccagg
 |||||||||||||||| || |||||||||||  | |||||||||||||||||||| |||||  |||| || |||||||| |||||| |||         | ||     |  ||  |||   |||||  |    ||  | |   |||||||||| ||       | | | |||        || |  |   ||| 
ATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTGgtgggtattatttcctagagccacttggttcatttgataacttcttgacttggta-gtgggtttcttttatttggttgattcatttatctagtcccttgtatctttacag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232146|gb|BE801034.1|BE801034
EST:     GACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGG                         TTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCA
genomic: GACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGtgagtaaaca ... cttgaccaggTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCA
EST: gi|14125241|gb|BG789679.1|BG789679
EST:     GACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGG                         TTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCA
genomic: GACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGtgagtaaaca ... cttgaccaggTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCA
EST: gi|58019197|gb|CX705939.1|CX705939
EST:     C-ACAAAAGCATGATTTTGTATTTTACTCTGATCGA-TGAATTCGATTGG                         TTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCA
genomic: CAAC-AAAGCATGATTTTGTATTTTACTCTGATCGATTG-ATTCGATTGGtgagtaaaca ... cttgaccaggTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCA
EST: gi|58018989|gb|CX705731.1|CX705731
EST:     GACAACAAAGCATGATTTTGTA-TTTACTCTGATCGATTGATTCGATTGG                         -TGTGGGAACATGGTTGGGGGCATCTGCCATTTACAGAAAAGCAAGTAATC
genomic: GACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGtgagtaaaca ... cttgaccaggTTGT-GGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATC