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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagttcttgtactcacacatgtgaacacatatatattcattttaacgagtttcattcctgcag

Basic information

species Glycine max
transcript GLYMA18G08030.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G010779_T01 (Zea mays), 5'ss of exon 9
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagttcttgtactcacacatgtgaacacatatatattcattttaacgagtttcattcctgcag---------------------
| | || || || || || || ||     | ||||| ||  | || |||||||| || ||||||||||| ||| | |||||||| |||||||| ||||| |  ||       ||   ||  |  |     | ||      | | || | | | |     |      |||                        
GAAGATACCGGTCGCGTTCATCAGCACTGTCTTGCTCCCGATCGTAGGGAATGCTGCAGAACATGCCAGCGCTGTTATGTTTGCGATGAAAGACAAACTGgcaagcagcagcttggcgttgttgccatctttaatgaccctttctttactgtgattttctgagactctgggctctctggcttgtctttcacag

upper sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G55730.1 (Arabidopsis thaliana), 5'ss of exon 9
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagttcttgtactcacacatgtg---aacacatatatattcattttaac---gagtttcattcctgcag
| | || ||| |  | ||||| |||||||| || |||||  |||| |||||||| ||||| |||||  |||| || ||||||||||||||||| || || ||       ||  |||  | |      ||||     |  |   | | |   || ||||       |||    || |||
GAAGATACCAATCTCTTTTATCAGTGTCATCTTACTTCCTATAGTTGGGAATGCGGCCGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTGgtacacagacaagtctcttgcgttttgatgtctttgattctcttctttaggttctaactttattattctcctctacag

upper sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G13320.1 (Arabidopsis thaliana), 5'ss of exon 9
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgag-gtttcagttcttgtactcacaca---------tgtgaacacatatatattcattttaacgagtttcattcctgcag----------------
| | || ||| |||| ||||| |||  ||| ||||||||  |||| ||||| ||||| ||||||||  | ||||| ||||||||||||||||| || || ||  |      ||||||||  ||   |||         | |  |  |  |||||  | | |    |||   ||      ||                 
GAATATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGAACGCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGgtatgcagagtagttcttgagctgtaacaactttaggttcttgattccgatatagccttgtccctgagacacaacttaacattatctcacttctacag

upper sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G55720.1 (Arabidopsis thaliana), 5'ss of exon 8
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagttcttgtactcacacatgtgaacacatatatattcattttaacgagtt-tcattc----ctgcag
| | || ||| |  | ||||| |||||||| ||||||||  |||| |||||||| || || |||||  |||| || ||||||||||||||||| || || ||  |    ||  |||  | |      ||||     | | | |  |    |||   | || | ||||    || |||
GAAGATACCAATCTCTTTTATCAGTGTCATCTTGCTTCCTATAGTTGGGAATGCGGCTGAGCATGCAGGTGCGATTATGTTTGCCATGAAAGACAAGCTGgtacgtaaacaagtctctttcattttgatgtctttgcttcttttctttagttataaatttattattctcctctacag

upper sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 8
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagtt--cttgtactcacacatgtgaacacatatatattcattttaacgagtttca---ttcctgcag
| |||| || ||  |||||||||| || || ||||||||| | || |||||||| || || || || |||||||| |||||||| ||||||||||| ||||||||  ||    |  |||| | |  ||  ||| |       || |||   |  |||     |||   || ||||||
GAAAATGCCTGTTTCATTTATTAGCGTGATTTTGCTTCCAATTGTAGGGAATGCTGCAGAGCACGCAAGTGCTATTATGTTTGCTATGAAAGATAAGCTTgtgagcattttcctggcttgcattt-catgtgttactgttctta-atttcctagaactcacctcagcttttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208295094|gb|GE089579.1|GE089579
EST:     ATGCAGCTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
EST: gi|51334704|gb|CO978570.1|CO978570
EST:     ATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT