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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaatatacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

Basic information

species Glycine max
transcript GLYMA18G06770.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaata---tacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| || || ||||| || ||||||||||| || |||||||| |||||||| || ||||| |||||||||||| | |||| ||| ||||||||||| |||||  || | ||||||  | | ||| || |||||   || |||    ||  | |   |  |  | || || | |||  ||   | ||     ||||  |       |                   
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgatt-atattcttttcctgattaat-tgttttgccacaatggcgtatgttggattgtttggcaagtgaacataactctcttttggt---tgaaactcggtgtgcag-----------------

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 6
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaa-atatacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| ||  ||||||| || ||||| || || || || ||||| |||||||| || |||||||||||||||||| | || ||||||||||||||||| ||||| |  ||    |||||     ||  | | | | ||     |||| | | |   |||  |   | |     | | | | || | || | |                                 
GTTGGGTTGCCAGCTCGTGGTAAGACCTTTACAGCGGCTAAGCTTACAAGGTACCTTCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgt-gcgcaatagcttaa-gctgtttctttatatgattgctcatattcatggtattagc-cactaatcatgttttcttacgtttcaattgtag-------------------------------

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 7
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaatatacttcgacctagtgcgaaactggaaatatgt-caagtatgaactatgaagattaacccacttatttttggatgtcacag
|| || || ||||| |||||||| || || || ||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||| |||||  |        ||| | | |   |  | | ||   ||||| | | |     ||  |     ||    || | | | | | ||   | |                                 
GTTGGGCTACCAGCTCGAGGTAAGACCTTTACAGCAGCTAAACTTACAAGATATCTCCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgataa-----tttagcttaagctaattttgtagagaaaat-tgcatgtgtgtatggtatcgctaatcatgtttgctattttgttttctag-------------------------------

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaata-tacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| || || ||||| || |||||||| |||||||||| ||| |||||||| || ||||| ||||| || ||| | || | ||| |||||||||||||||||  || | ||| ||| |  |  | | |||| |     |  || |   |  || |  | |  |  || |||    | || |  |   | |   | | ||   |  | |               
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaatt-atattgtta-ctccgattaactgtcttgcagagttaatgtgtttactt--ttcttatttgcaaa---attaattgagttttcttttgttgaaaatatgtgtgcag-----------

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaatatacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|| ||  ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||  || | ||| ||||  | |||||||     |     |||   | | ||  | | |  | | ||  |  |  |   ||   |||                                    
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatc---acagctctaat---cattgaagt-gaggaagattgatatgacttttggttgtaacag----------------------------------

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S242_66V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgtt--gttcacat--tcttaacatcattcatctgtttaa----tcaaaatatacttcgacctagt-gcgaaactgga-----aatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag------------------------------------------
|| ||  |||| || || || || ||||||||||||||||| || ||  ||||| | |||||| |||||||| ||||||| ||||| ||||| || |||||    |||      |||    ||    |   |||| |     |||   | |   |     | || ||  || |        | |||||   || |  | |||  |  ||   ||    | ||||  |  ||                                              
GTTGGGTTGCCGGCGCGTGGAAAGACTTTCACTGCAGCTAAGCTGACCCGATATTTGCGATGGCTAGGTCATGATACCAAGCACTTTAATGTCGGCAAGgtacgattcgagagatctgggtatttagctggtgttcacattctcagcgtgtttcttcttttggtagcataatttaggtctgactatgttgcgtgtccagtatccaagttcttccttcaaattttaaaattcttgcactacagtactttgacatcgcttgcacttttgacgtttacag

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaatat--acttcgacctagtgcgaaactggaaatatgtcaagta-tgaactatgaagattaacccacttatttttggatgtcacag
|| || || || || ||||| || ||||| || |||||||| || || ||||||||  | ||| | || ||| |||||||||||||||||||||| |||||       | |||   ||| | |   | ||  ||  |  || |  |  |  | ||| || ||    ||| |    |    || |    | ||  | |||                         
GTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAGgtaagct-tagtctgctcattagtagacagtgaaagtagtattttgagctttaactattgtgaggg-ggacagtcattgtctacttggttctggtgtttagt-----------------------

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S215_89V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgt-tgttc-------acattcttaacatcattcatctgtttaatcaaaatatacttcgacctagt---gcgaaactggaa-----atatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag--------------------------------------------------------
|| ||  | || || || || || || ||||||||||||||||| || |||||| | || |||||||||||| | ||||| |||||||||||||| ||||| ||||        || || |   || |     ||  | |  ||||  |||   | |   | ||     ||   ||| |     |||| |   |||   | |||  |   |  | |  | |  |||     | | ||                                                        
GTTGGGTTACCGGCTCGTGGAAAGACATTCACTGCAGCTAAACTGACCAGATATTTGCGGTGGTTAGGTCATGACACCAAGCACTTCAATGTTGGCAAGgtatgtttttagaaaactttgtacgcagctggtgtcaatcttctcaacttatttcttgttttggttgcatgattttgggatgattatattttgtgtacccaatatctaaggtg-ctctttcaggttttagccttagagtgcacactttttgcagtggagtattttgatgcgattgtgcttttgatgtttcacag

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ07288 (Selaginella moellendorffii), 5'ss of exon 3
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaatatacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag
|||||  | |||||  | || |||||||||||||| |  || || |||||||||||||| ||| | |||||| | || ||||||||||| ||||| || ||   |||    |||    |   |     |  |        | |  |  ||  |  | |  | | |                                                        
GTGGGCTTACCAGCAAGGGGGAAAACTTTCACTGCTGTCAAGCTAACAAGATATCTTCGTTGGCTTGGTCATGACACTAAACACTTCAACGTTGGAAAAgtcagtcagtcactttgtttgtcttgaagggctctcaggtttttggtgtgattt--ttcttaccag--------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964344|gb|BM271080.1|BM271080
EST:     ATGTTGGGAAG                         TATCGTCGCCTTAAGCATGGAGCTAATCAG
genomic: ATGTTGGGAAGgttgttcaca ... gatgtcacagTATCGTCGCCTTAAGCATGGAGCTAATCAG