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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACATTTAGTCGGATAGATCCCGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTACAGATACACAGgttgtgacacaatttccattttactatgtgtggcttctcctttgaataatacatcttttattattattattattattattattattattattattattatttctgttggtgaatatgataaacggctattgtttaaacag

Basic information

species Glycine max
transcript GLYMA18G05840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 7
TAACATTTAGTCGGATAGATCCCGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTA-CAGATACACAGgttgtgacacaatttccattttactatgtgtggcttctcctttgaataatacatcttttattattattattat-tattattattattattattattattatttctgttggtgaatatgataaacggctattgtttaaacag
| || |||||||||||||| || ||||| |||||||||||||| ||| | |||||  | ||  ||  ||| |   |||   || | |   |    |  ||  |     |   || |  |      ||| | | ||| | | |  || ||   |    |||| | | || ||||  ||| ||||||                                  
TGACTTTTAGTCGGATAGAACCTGGAGGGAAACTTGTTATGGGCTTCCGGAAGGCCACAAACACTGTCAGTTTGCCAgtaagttagattttcctaacattcttcctactaatttattttcctgcaaatgcttgtttcactttcctttttcccttcctttatcaatgtttttat-gttacttctgtacag------------------------------

upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 7
TAACATTTAGTCGGATAGATCCCGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTACAGATACACAGgttgtgacacaatttccattttactatgtgtggcttctcctttgaataatacatcttttattattattattattattattattattattattattattatttctgttggtgaatatgataaacggctattgtttaaacag
| || |||||||| |||||||| ||||| |||||||||||||| ||  | |||||  | ||| ||     |   |  ||   |  | | |||||||   |||||    || |  |  |   | |  |   || ||| | ||  || || ||   ||  || ||  ||||| | |||                                         
TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaa-gctagattttccatcagactat---cggttgttgttgcaagtgcttgttcctttctcat-gtttttgtttcaatgtttgtt--tattacttttacacag------------------------------------

upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 7
TAACATTTAGTCGGATAGATCCCGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTACAGATACACAGgttgtgacacaatttccattttactatgtgtggcttctcctttgaataatacatcttttattattattattattattattattattattattattattatttctgttggtgaatatgataaacggctattgtttaaacag
| || |||||||| |||||||| ||||| |||||||||||||| ||  | |||||  | ||| ||     |   |  ||   |  | | |||||||   |  || | | |||  | |    ||       | ||| ||     || | ||  || ||  |   ||  || ||  |||| || ||    |                            
TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAAGGCCACAAATACTGTCAGTCTGCCAgtaa-gttagattttccataagataatctattgctgatgc----aagtgcttgtttttcatctcctttctcat-gtttttgcttcgatgtttgtt--tattacttttacgcag---------------------------