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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGGtaggttttttattttctgcatcatgtatttgtcaactctagagttgcttttgcatattatttttaggtaaatgctaactagtgccattagggtattggtt...

Basic information

species Glycine max
transcript GLYMA18G04910.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 10
-TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGGtaggtt-----ttttattttctgcatcatgtatttgtcaactct--agagttgcttttgcatattatttt-----taggtaaatgc---taactagtgccattagggtattggtt-----------------------------
 ||||||||||||||| | ||||||||||| ||||||||||| |||||||   ||     ||| |||||||   | || |||   |||  | |  | | |  ||  |  | | || | |     | | | ||| |   | |  | || |  |    |  |  ||                             
GTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAGgtgatttaccaatttgattttctttttaatatatacatcatttgttcacaatacctagtagaaaataatctctcagtcgctgaatccatgtcatgaatgaccctgaaattctcatttttctttgaactctggtcctttcttacag

upper sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 9
-TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGGtaggttttttattttctgcatcatgtatttgtcaa--ctctagagttgcttttgcatattatttttaggtaaat-gctaactagtgccatt-agggtattggtt
 |||||||||||||||||||| |||||||| ||||||||||| || ||||  | |  | |  |    |      || || |  |  | ||  |  |  |||     |||  ||  ||  |    |||  |      |||| ||  |  |||  
GTACTTTGACCGTGATGTTGAGTGCATCTTCAAGTTTTTCAGCAAGAGgtcagctgctaacctaaaactcttgctaatttttgatacccttaaactaattt---gaattccttaaagaaaccccgcttgcattgatcatttagccttctgg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522620|gb|BU081431.1|BU081431
EST:     TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG                         TTCAATCTTTCTTTTCAAGAAAGCATAGATGATATTGATGGTTCTGATGAA
genomic: TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGGtaggtttttt ... ctgtttcaggTTCAATCTTTCTTTTCAAGAAAGCATAGATGATATTGATGGTTCTGATGAA
EST: gi|120532159|gb|EH260292.1|EH260292
EST:     TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG                         TTCAATCTTTCTTTTCAAGAAAGCATAGATGATATTGATGGTTCTGATGAA
genomic: TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGGtaggtttttt ... ctgtttcaggTTCAATCTTTCTTTTCAAGAAAGCATAGATGATATTGATGGTTCTGATGAA