1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGGGAGCATGAAAGCCTCTGATGATGACCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttcatagcttagtaatcagtaactttttatcaaatagcttcttttcctatttgtttgatgatacattgcttcagctcatctctgctattgtca...
species | Glycine max |
transcript | GLYMA18G04160.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCA GTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCEST: gi|192309271|gb|FG999470.1|FG999470
genomic: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttc ... attttttgaaGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCC
EST: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCA GTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCEST: gi|207846017|gb|GD818512.1|GD818512
genomic: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttc ... attttttgaaGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCC
EST: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCA GTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCEST: gi|11411468|gb|BF423479.1|BF423479
genomic: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttc ... attttttgaaGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCC
EST: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCA GTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCEST: gi|151407599|gb|EV277414.1|EV277414
genomic: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttc ... attttttgaaGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCC
EST: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCA GTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCEST: gi|58016501|gb|CX703243.1|CX703243
genomic: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttc ... attttttgaaGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCC
EST: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCA GTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCC
genomic: GAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttc ... attttttgaaGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGAGCATGAAAGCCTCTGATGATGACCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAggtttgtttcatagcttagtaatcagtaactttttatcaaatagcttcttttcctatttgtttgatgatacattgcttcagctcatctctgctattgtca
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG