Sequence
atgc intronic sequence ATGC exonic sequenceTCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag
Basic information
species | Glycine max |
transcript | GLYMA18G03750.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02480.t01 (Vitis vinifera), 5'ss of exon 8
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag
|| |||||||| ||||||| | ||||||| ||||| || | || ||||||||||| || |||||||||||||||||| || ||||| ||||| || ||| || |||| || | | | || | | | || ||||| | | || | | | | |||||| ||
TCTATGGCTTGCCCACATGCTACTGGAGCAGCAGCCTACATCAAGTCATTTCATCCCACCTGGTCTCCTGCTGCTATTAAGTCTGCTCTTATGACTACTGgtaatg-cctaaattctattcctaacctttgaaactataaac--agctggtattaa----tagtatttaatctctcccctctgtgtgtttgtgagcag-----
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02610.t01 (Vitis vinifera), 5'ss of exon 8
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtga-----taatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag-------------------------------------------------------------
|| |||||||||||||||| ||| || || || || || |||||||||||| | ||||||||||||||||||||||| || || |||||||||| ||| | | || | | || | | | || | | | | | | | | || | || || | | || | |||||| ||| ||
TCCATGGCTTGTCCACATGCTTCCGGGGCTGCTGCCTACGTTAAATCATTTAACCCAACATGGTCTCCTGCTGCTATCAAGTCTGCCTTAATGACAACTGgtaagggcttcatccataatctgtgggcatttttgaaactaaaattttttaggcagagtatcttgttcaagtactctttttgaaagctgct-tttgtggacagacaagttgaagtattaaaagaacccgtatctgtaactaatgcccatgtttccattgccattggcag
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02490.t01 (Vitis vinifera), 5'ss of exon 19
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag
||||||||||||||||||| | |||| || || || || | || |||||||| || || |||||||||||||||||| || ||||| ||||| || ||| || | ||| | | | | ||| || || || | || | ||| | ||| || || | | | |||| | |||
TCAATGGCTTGTCCACATGCTACTGGGGCAGCTGCCTACATCAAGTCATTTCACCCCACCTGGTCTCCTGCTGCTATTAAGTCTGCTCTTATGACTACTGgtaatgactgaatt----ttattcccgacctttcaaattatgaaagaggtgatagtaat---ggatcttagtcct--ttgtgtgttctgtaagcag-------
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02530.t01 (Vitis vinifera), 5'ss of exon 9
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag
||||||||||||||||||| | |||| || || || || | || |||||||| || || |||||||||||||||||| || ||||| ||||| || ||| || | ||| | | | | | | || || || | || | ||| | || || || | | | || | | |||
TCAATGGCTTGTCCACATGCTACTGGGGCAGCTGCCTACATCAAGTCATTTCACCCCACCTGGTCTCCTGCTGCTATTAAGTCTGCTCTTATGACTACTGgtaatgactgaatt----ttattcccggcctttcaaattatgaaagaggtgatagtaat---ggattttagtcct--ttgtgtgttttgtaagcag-------
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02600.t01 (Vitis vinifera), 5'ss of exon 8
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatga-aatgagtgatgacacatctcatgatctcaactagtattggaatttggaatca-tactcttggctaactcttctttgtgcacattgcag---------------------------------------------------------------
|| |||||||||||||||| ||| || || || || || |||||||||||||| ||||||||||||||||||||||| || || |||||||||| ||| | | | ||| ||| | || | | || | | || | | | ||||||| || || |||| || | | ||
TCCATGGCTTGTCCACATGCTTCCGGGGCTGCTGCCTACGTTAAATCATTTCACCCAACATGGTCTCCTGCTGCTATCAAGTCTGCCTTAATGACAACTGgtaagggcttcatccataatctgtgggcatttttcaaactaaagttttaaggctgagtatcttgttcaagtactctttttgaaagctgcttt-tggagacagctaagttgaagtattaatagaacccgtatctgtaactaatgctcatgtttccattgttattggcag
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02560.t01 (Vitis vinifera), 5'ss of exon 8
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactc--ttggctaactcttctttgtgcacattgcag
|| ||| |||||||||||| |||| ||| || || ||| | || |||||||| |||||||||||||||||||||||| || |||||||||||||| ||| | ||| || | | | ||| | | | || | || | || ||| | |||| | || || | | | |
TCCATGTCTTGTCCACATGCGTCTGCAGCTGCTGCCTATATCAAGTCATTTCACCCAACATGGTCTCCTGCTGCTATTAAGTCTGCTCTAATGACAACTGgtaagaatccaagagcacttt-tgaacgtaggctttagag----aagaatcatcttgctccacaagcatttttagttgggaacctgaaattgaagaaaaaaaaaa
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02590.t01 (Vitis vinifera), 5'ss of exon 6
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag------------------------------------------------------------------
|| ||| |||| ||||||| |||||| || || || || || ||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||| || || | | | | | | || | | | | | || || | | | | | | | ||||| ||| ||||||
TCCATGTCTTGCCCACATGCTTCTGGGGCTGCCGCCTACGTCAAATCATTTCATCCAACATGGTCTCCTGCTGCTATCAAGTCTGCTTTAATGACAACTGgtaatcgcttaatccaca-gtctaaggtcatttttgaagctaaggtctgagatctaagaggaagagaaaaaaatgagaaatctctttcaactgc-cattgctttaagaatatacttcatgctataaccaaatctgtaactaatcttcatgattacattattgtttgcag
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02480.t01 (Vitis vinifera), 5'ss of exon 18
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag-------
|| |||||||||||| ||| |||||| || || || ||||| ||||||||||| ||||||| |||||||||||||||| || |||||||||||||| ||| || | | | || | || | ||| || |||| | || || || | | || || | || ||| | |||
TCCATGGCTTGTCCAAATGCTTCTGGGGCTGCTGCCTATGTCAAATCATTTCACCCAACATAGTCTCCTGCTGCTATTAAATCTGCTCTAATGACAACTGgtaatggtttgatccatattc-taattatacaa-----gacatcaatgaaagcaggggttaggga----agaattagccatcttcctttttcaaatatttttaaccaaaa
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02580.t01 (Vitis vinifera), 5'ss of exon 8
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag------------------------------------------------------------------
|| ||| |||| || |||| |||||| || || || || || ||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||| || | || | | ||| |||| | | | | | || || | | | | | | | || || | ||| ||||||
TCCATGTCTTGCCCGCATGCTTCTGGGGCTGCCGCCTACGTCAAATCATTTCATCCAACATGGTCTCCTGCTGCTATCAAGTCTGCTTTAATGACAACTGgtaatgctttaatccata-atctgaggacatttttgaagctaaggtctgagatctaagaggaagagaaaaaaatgagaaatctgtttctactgc-cattgctttaagaatatacttcatgctataaccaaatctgtaactaatcttcatgattacattgttgtttgcag
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02620.t01 (Vitis vinifera), 5'ss of exon 6
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatga-aatgagtgatgacacatctcatgatctcaactagtattggaatttgga--atcatactcttggc-taactcttctttgtgcacattgcag
|| |||||||||||||||| ||| || || || || || |||||||||||||| ||||||||||||||||||||||| || || |||||||||| ||| | | | ||| ||| |||| | ||| ||||| ||| ||| || ||| | || | | | || | ||||
TCCATGGCTTGTCCACATGCTTCCGGGGCTGCTGCCTACGTTAAATCATTTCACCCAACATGGTCTCCTGCTGCTATCAAGTCTGCCTTAATGACAACTGgtaagggcttcatccataatctgtg--gacatttatca-------aactaaaatttgaaggcagagtatcttgttccaagtattaaaagaacccgtattattggcag
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02590.t01 (Vitis vinifera), 5'ss of exon 17
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag-
|| |||||||||||||||| ||| || || || || || || ||||||||||| ||||||||||||||| ||||||| || || |||||||||| ||| || | | | ||| | || ||| | || || | || | | || | | | | | ||| ||| | ||
TCCATGGCTTGTCCACATGCTTCCGGGGCTGCTGCCTACGTCAAATCATTTCACCCAACATGGTCTCCTTCTGCTATCAAGTCTGCCATAATGACAACTGgtaatggcttcatccata-atctgagggcattcttca--aactaaagttttaacgcagattatcgt-gttccactactctgtgatcacttgagcaaaatgagat
upper sequence: GLYMA18G03750.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g02640.t01 (Vitis vinifera), 5'ss of exon 6
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataata-gaaatgaaat---gagtgatgacacatctcatgatctcaactagtattggaattt--ggaatcatactcttggctaactcttc--tttgtgcacattgcag--------------------
|| |||||||| ||||||| ||| || || || || ||| | ||||||||||| ||||||||||||||| |||||||| || |||||||||||||| ||| | | || | ||| | || | | | | | | |||| | ||| | || | | | || | ||| ||| | |||||
TCCATGGCTTGCCCACATGCTTCCGGGGCTGCTGCCTATATCAAATCATTTCACCCAACATGGTCTCCTTCTGCTATTAAGTCTGCTCTAATGACAACTGgtactggtttgatctataatccaaaagcatctttaaaataaaaacattagtaagtactatgtttttcgaaagtaactgaattggtacatgttcagtttttctacattttgagtttctgttattatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|105637440|gb|DY577138.1|DY577138EST: TCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAG CTAAACAACTTAGTCCAAAGACTAACCTTCGGGCAGAATTTGCATACGGCT
genomic: TCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatag ... cacattgcagCTAAACAACTTAGTCCAAAGACTAACCTTCAGGCAGAATTTGCATACGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAATGGCTTGTCCACATGTTTCTGGAGCCGCAGCGTATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGgtgataatagaaatgaaatgagtgatgacacatctcatgatctcaactagtattggaatttggaatcatactcttggctaactcttctttgtgcacattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC