1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatacactcccctaaattttgatgcatgtttgctgatttctttgtattttggatttgttatcatattatgaaaataacagttttgtaaggttgga...
species | Glycine max |
transcript | GLYMA18G03360.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAAAATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|209702245|gb|BW664636.1|BW664636
genomic: TAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|207776492|gb|GD747405.1|GD747405
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|193412978|gb|FK381695.1|FK381695
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAAGTTACGGEST: gi|209700576|gb|BW670404.1|BW670404
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATC-AGTTACGG
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|151409423|gb|EV279231.1|EV279231
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|193541743|gb|FK498431.1|FK498431
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|208198358|gb|GD995463.1|GD995463
genomic: TCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCNGTTACGGTEST: gi|208173433|gb|GD971188.1|GD971188
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|213596106|gb|DB975869.1|DB975869
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: CATCTCTCA-AACGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|193401209|gb|FK370152.1|FK370152
genomic: CATCTCTCATTA-GAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGANCGGGEST: gi|214006383|gb|DB985759.1|DB985759
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGG
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|193363559|gb|FK330863.1|FK330863
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: CAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGTEST: gi|193406522|gb|FK371827.1|FK371827
genomic: CAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
EST: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAA GATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
genomic: TCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatac ... aatgatttcaGATGCTTAACAAGGAACATGAGCGGGCAGAAGATTCGAAATCAGTTACGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAggtgagatacactcccctaaattttgatgcatgtttgctgatttctttgtattttggatttgttatcatattatgaaaataacagttttgtaaggttgga
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaataa