1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtgttaaatattttcatgatgaccttcattccttgttgctacagttggttttccaagagaagctttgtaacataatgaacattttcatatggc...
species | Glycine max |
transcript | GLYMA18G00920.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGCCGAGTCTGGAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|254326113|gb|GR840705.1|GR840705
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|192324353|gb|FK015704.1|FK015704
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|31458741|gb|CD400769.1|CD400769
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|13563234|gb|BG551454.1|BG551454
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|58022050|gb|CX708791.1|CX708791
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|14008855|gb|BG725459.1|BG725459
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|4289526|gb|AI441488.1|AI441488
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCANAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|192312176|gb|FK005661.1|FK005661
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: CAGCCGAGTCTGGAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGEST: gi|6073149|gb|AW102536.1|AW102536
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: ATCTCCTTCACCAGCTGCAGATCAAAATGATCAG TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: ATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtgttaaatattttcatgatgaccttcattccttgttgctacagttggttttccaagagaagctttgtaacataatgaacattttcatatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA