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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTTGAGAGGGAACAATTTGGTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTgtaagtttcacaatcactcccttttataatccaagttgtaaaaatgtgcatttcctaagtgaatatatgattgttttcctcctactattttgtag

Basic information

species Glycine max
transcript GLYMA17G34380.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 8
AGGCTTGAGAGGGAACAATTTGGTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTgtaagtttcaca-------atcactcccttttataatccaagttgtaaaaatgtgcatttcctaagtgaatatatgattgttttcctcctactattttgtag------------
 ||  || |||| ||||||||||||||| |  | || || || ||||||||||| |||||| ||||||||||||||||||   |       | |  |||||  || || |||  |  | |   | | |||||  | |   ||||  |||  | ||| | |   |||||||                
TGGGCTGCGAGGAAACAATTTGGTTGGTACTTTGTCTCCTGATATGTGCCAGTTGACTGGGTTGTGGTATTTgtaagttttcgatacctttacctttccctcctagaaccca--tcctcagttttttcatttattga--aaatacttgagggcttttcccaatctatttttctctaccatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208289923|gb|GE088931.1|GE088931
EST:     GTTGGTCCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTT                         TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAA
genomic: GTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTgtaagtttca ... tattttgtagTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAA
EST: gi|193327211|gb|FK291216.1|FK291216
EST:     TTGGTTCACTATCACCAGTACATGTGCCAGTTAACTGGGCTGTGGTATTT                         TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAA
genomic: TTGGTTCACTATCACCAG-ACATGTGCCAGTTAACTGGGCTGTGGTATTTgtaagtttca ... tattttgtagTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAA
EST: gi|208294800|gb|GE094773.1|GE094773
EST:     GTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTT                         TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAA
genomic: GTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTgtaagtttca ... tattttgtagTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAA