Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTAGCTATGATAAGGAAGGAAATCATAGATTGAGAGGAGACATAAATGTTCTTCTTCTTGGTGATCTAGGAACAACAAAGTCTCAATTTCTTAAgtgtagcttcatccatcttattttgtaaatatcttctttccacttataattatgataagtaaattaataaatattttaaaatctactacaag

Basic information

species Glycine max
transcript GLYMA17G32890.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G32890.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 9
----CTTTAGCTATGATAAGGAAGGAAATCATAGATTGAGAGGAGACATAAATGTTCTTCTTCTTGGTGATCTAGGAACAACAAAGTCTCAATTTCTTAAgtgtagcttcatccatcttattttgtaaatatcttctttccacttataattatgataagtaaattaataaatattttaaaatctactac--aag
    |       |  ||   ||||| || ||||| ||| |||||||||||||||| ||||| |||||||||| ||| ||  | || || || ||| | ||||  ||    | ||   ||| | ||| | |  |||   |    | |||||    ||  ||   ||||     |    || || |  | |  |||
GAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAgta-agaccgaccccaattaatctgtgagtggcttgactggtttgataatagcaatcggttg-ttaacttccaaaaaaacattttttccccaag