1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGTTGCCCGCTTTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatctgtcattttgtcgtaagtaggatatgctgttttgaatattggctataacaagaccaactaatgaatctttgtttggataaatttttccata...
species | Glycine max |
transcript | GLYMA17G26900.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG GG-CTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTTEST: gi|254342909|gb|GR859071.1|GR859071
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
EST: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG GGGCTTCTTTTCTCGACATTTTGAGCTTGEST: gi|6719570|gb|AW307217.1|AW307217
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTT-CTCGACATTTTGAGCTTG
EST: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG GGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTTEST: gi|15203897|gb|BI426665.1|BI426665
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
EST: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG GGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTTEST: gi|254342910|gb|GR859072.1|GR859072
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
EST: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG GGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGTTGCCCGCTTTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatctgtcattttgtcgtaagtaggatatgctgttttgaatattggctataacaagaccaactaatgaatctttgtttggataaatttttccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC